Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03260 ATGGTTAAGCTGATCTCTTTGCTGTTATTGTCGATCAAAATGGGCCTCTATAGTCTCCCAACACCATCAGAAGGAGTATGGTGTGTGCTTCTGGTAAACACTGCCTTGTCAATCTCCATAATTAAAGCCATTGTCAGAACAATCCTCCACATAGTTGGTATCCGtctatcatcatcatcaccagCAACAACAACTTCTTTACCAGATTCCCAAAATCCACCTGAGCCCTTTAAGTTCCATCTTTTTCCCTTTGAGGGCTACATTGAAGAGTTCAAAAGCAGGACACCAACACTTCGTTTTGACAGTGTCTGTAGCTGCAGAAGACCTGAACATGACTGCTCTGTGTGCTTGACTCGATTCGAACCGGATTCGGAGATAAACCGCTTATCCTGTGGCCATTTCTTCCATAAAGTCTGCTTGGAGAAGTGGTTGGAGTATTCGAACATCACATGCCCTCTTTGCAGAGCGCCATTGATGCCTGAGGAAGATTCATCTTGCTTCTGGTG 506 0.4308 MVKLISLLLLSIKMGLYSLPTPSEGVWCVLLVNTALSISIIKAIVRTILHIVGIRLSSSSPATTTSLPDSQNPPEPFKFHLFPFEGYIEEFKSRTPTLRFDSVCSCRRPEHDCSVCLTRFEPDSEINRLSCGHFFHKVCLEKWLEYSNITCPLCRAPLMPEEDSSCFW 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03260 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 14 168 - -
Bva12g03260 168 SUPERFAMILY RING/U-box 109 160 - -
Bva12g03260 168 Pfam Ring finger domain 112 155 IPR001841 -
Bva12g03260 168 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Bva12g03260 168 PANTHER - 14 168 IPR044249 -
Bva12g03260 168 SMART ring_2 113 154 IPR001841 -
Bva12g03260 168 SMART ringv_2 112 155 IPR011016 GO:0008270
Bva12g03260 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03260 Bva-Chr12 23435816 23437291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03260 14 162 C3H Transcription Factor Family AT2G04240 58.442 3.90e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03260 K16285 - gmx:100786803 245.358