Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03257 ATGGGTTCTAGAAAGGGCGACAATCCTCACTCCGGCGACGGCGCCAGTCCTGGGAAAATCTTCATCGGGGGATTAGCTAAAGATACAACTTTGGataCCTTTGTCAAGTACTTTGAGAAGTACGGGGAGATAACAGACTCGGTGATCATGAAAGATCGGCACACGGGTCGTCCGAGAGGCTTTGGGTTCATCACCTATGCGGATCCTTCTGTTGTCGACCAAGTTATTCAGGAGGACCACGTGATCAATGGCAAGCAAgtTGAGATCAAAAGGACCATTCCAAAGGGTGCAGCACTAGCTAATGATtttaaaaccaagaaaatttttgttggtGGCATCCCAACCGCAGTAACTGAAGATGAATTCAGGAACTTCTTCTCGAAGTATGGGAAGGTTGTGGAACATGAGATTATACGGGACCATACCACTAAGCGTTCTCGAGGGTTTGGATTTGTTGTGTTTGATAGTGATAAGGTTGTTGATAATTTGCTGGCAAATGGAAATATGATTGATATGGAGGGCACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGGACCTCTTCCTCCATTTGGTAGTGACTCTAGGGCTCGACCATACAGTGATGGTTATATTGGATTTGGAGATTCTTATAGCAGTTTTGGAAGTGGAGGTTTTGGTCCTTCGTCTTATAGGTCCCTTGGAGGCTATGGTGGTAGGCTTGGTGATTATGGTGGTTATGGCAGTGGAGATGAATTTAGTGGTAGTTTTGGTGGGTATCCTGGTGGTGGTTTTGCAGGCTTTCGAGGAGAGCCATCTTTTGGCTATTCTAGCCGCTATGGTTCCTATATGGGGGGCCTTAGCAGTGGATATGGTGGGAGCGGATTAGGTGGATATGGCCGTGGTGGTGGGGGCTATGGAAGCTATGGTGGTCCAGGCTCTGGTGGGGGTTATGATTCAGCCCCTGGTGCTGAATATGGTGGCGCGGGAGGACTATATGGTAGTAGGGGAAGTTATGGTGGTAGTAGTCGTTACCATCCTTATGCAAGATA 1046 0.4665 MGSRKGDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGAALANDFKTKKIFVGGIPTAVTEDEFRNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDSDKVVDNLLANGNMIDMEGTQVEIKKAEPKKASNPGPLPPFGSDSRARPYSDGYIGFGDSYSSFGSGGFGPSSYRSLGGYGGRLGDYGGYGSGDEFSGSFGGYPGGGFAGFRGEPSFGYSSRYGSYMGGLSSGYGGSGLGGYGRGGGGYGSYGGPGSGGGYDSAPGAEYGGAGGLYGSRGSYGGSSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03257 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Bva12g03257 348 SUPERFAMILY RNA-binding domain, RBD 99 193 IPR035979 GO:0003676
Bva12g03257 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Bva12g03257 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Bva12g03257 348 Gene3D - 96 207 IPR012677 -
Bva12g03257 348 PANTHER OS08G0320100 PROTEIN 1 348 - -
Bva12g03257 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 80 IPR000504 GO:0003723
Bva12g03257 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 170 IPR000504 GO:0003723
Bva12g03257 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Bva12g03257 348 SUPERFAMILY RNA-binding domain, RBD 10 96 IPR035979 GO:0003676
Bva12g03257 348 Gene3D - 18 95 IPR012677 -
Bva12g03257 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03257 Bva-Chr12 23410353 23413260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03257 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 27.513 8.59e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03257 K12741 - gmx:100801373 417.157