Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03254 ATGTTAAACAATCCCTCTTCGCATCTGCACATGGGTTCTAGAAAGGGCGACAATCCTCACTCCGGCGACGGCGCCAGTCCTGGGAAAATCTTCATCGGTGGATTAGCTAAAGATACAACTTTGGataCCTTTGTCAAATACTTTGAGAAGTACGGGGAGATAACAGACTCGGTGATCATGGAAGATGATCGGCACACGGGTCGTCCGAGACGCTTTGGGTTCATTACTTATGCGGATCCTTCTGTTGTTGACCAAGTTATTCAGGAGGACCACGTGATCAATGGCAAGCAAgtTGAGATCAAAAGGACCATTCCAAAGGGTGCAGCACTAGCTAATGATtttaaaaccaagaaaatttttgttggtGGCATCCCAACCACAGTAACTGAAGATGAATTCAGGAACTTCTTCTCGAAGTATGGGAAGGTTGTGGAACATGCGATCATACGTGACAATACCACTATGCGTTCTCGAGGGTTTGGATTTATTGTGTTCGACAGTGATAAGGTTGGTGATAATTTGCTGGCAAATGGAAATATGATTGATATGGAGGGTACTCATGTTGAGATCAAGAAGGCTCAACCAAAGAAAGCCTCAAACCCTGGACCTCGTCATGAGGATTA 623 0.4334 MLNNPSSHLHMGSRKGDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMEDDRHTGRPRRFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGAALANDFKTKKIFVGGIPTTVTEDEFRNFFSKYGKVVEHAIIRDNTTMRSRGFGFIVFDSDKVGDNLLANGNMIDMEGTHVEIKKAQPKKASNPGPRHED 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03254 207 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Bva12g03254 207 SMART rrm1_1 118 191 IPR000504 GO:0003723
Bva12g03254 207 SMART rrm1_1 29 101 IPR000504 GO:0003723
Bva12g03254 207 MobiDBLite consensus disorder prediction 1 25 - -
Bva12g03254 207 Gene3D - 107 207 IPR012677 -
Bva12g03254 207 PANTHER TRANSFORMER-2-RELATED 11 204 - -
Bva12g03254 207 Gene3D - 28 106 IPR012677 -
Bva12g03254 207 SUPERFAMILY RNA-binding domain, RBD 115 204 IPR035979 GO:0003676
Bva12g03254 207 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 11 204 - -
Bva12g03254 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 168 IPR000504 GO:0003723
Bva12g03254 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 93 IPR000504 GO:0003723
Bva12g03254 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Bva12g03254 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03254 Bva-Chr12 23399915 23401598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03254 14 192 Eukaryotic Initiation Factors Gene Family AT1G71770 24.876 1.92e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03254 K12741 - gmx:100801373 335.495