Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03229 ATGAAGCCTCTCAAGCCTAACTCTCCCACACTCTGTCATGTTTACCATCAAATCttacttctcttctctttgagctttatatttcttcttccaaTTCCTGCTGCACGAGCACTGACGAATGAGACAGAAAAAATGGCATTGCTCAAATTTAAGGAATCAATAACCAATGACCCACATGGAATACTAGGCTCCTGGAATGGCTCAACTCACTTCTGCAATTGGGTTGGAGTAAGATGCGGCAGGAAGCACCAGAGAGTTACAGCTTTGGAACTAAATGGCTATGGATTTGGTGGATTGATATCACCTTATATTGGCAACCTCTCTTTTATCAGATCCATCATGCTTTGCAACAATAGTTTGTCTGGCCATATTCCACTGGAAATTGGACGTTTGTTTCGTCTACAAGATTTTTTGCTTTGGAATAACACACTCGGTGGAGAAGTTCCAAGAAGCTTGGTTAATTGCTCTCAACTCAGAATCTTAGACTTGACAACAAATCATTTAACAGGGCCTATACCTATAGAGTTTGGCTGTTTAATGAAGCTAGAAGAGCTTTACCTGGGAATTAATATTCTCACAGGTGGCCTGCCACCCACCTTAGGGAACATTTCATCACTTGTTGCATTATCTGTAGCGGGAAATAGTCTGGAGGGACTTATTCCATATGAAATTGGATGTTTAAAAAAGTTATCCAAGTTTGAAATTGGCGTTAATAATCTGTCAGGTGCTATCCCTTCTTCTCTGTACAATATTTCCTCTATGACAATATTATCTGCTACCCAAAACCAACTAGGTGGTACCCTACCAGACAATATAGGCACCGCAATGTGGAATCTCCAGGTTCTTGAACTTGGTTTTAATAAATTGTCTGGGTCTGTTCCACCATCACTATGCAATATTTCTGGTCTTCAATCAGTTGATTTGGgagataataattttgtggGATCAGTTCCAACCAATTTTGGAAAACTTAGACAGCTTTCATTTCTTGGTTTATGGAACAATCATTTGGGGCATAACTCATGGAAAGACTGGGATTTCTTGAATTCATTAACAAACTGCAGCAAGCTGGAATTCTTTGATCTCGCTTGCAACAATGTCGGGGGCATTCTACCCATGGCTATTGGAAATCTGTCAAACCAACTAAGCTATCTGTTTTTGGAATCCAACAAGATACATGGCTCCATTCCTGCTGAAATCACAAGTCtaagaaatttaatctttttggaCTTGGAGAATAACTCTTTCACAGGTACTATTCCCACTTCTTTTGGGCAGTTTCGTAAATTACAAGTTTTGATTCTACGTCAAAACAAGTTGTCTGGGCATATTCCATCTTCCATTGGTAATCTCACGAGGCTTATTAATCTTTACTTCGATGAGAATAGATTAGAAGGGAGCATACCAGAAGATTTTGAGAATTGCCAAAACTTACAAAAGCTGttaatttctcataataatttaaatgggGCAATTCCTAAGAAGATTTTTCGGATTTCTTCATTGATTTGGCTCAATTTGTCACACAACTCATTGGCTGGTAGACTACCTCATGAAAGAggcaatttgaaaaatatctaCTCGTTGGATCTCtctgaaaatgttttgttCGGGGACATCCCTACAGCCATTGGAGATTGCTTGAGCCTAgaatatcttttccttcaaGGAAATTTCTTCCAAGGTGGTCTACCAGCATCTCTGGCATCCCTGAGAGGTATTCGAATCCTAGATCTCTCACGAAATAATTTGTCTGGAGAAATTCCAAAAGATCTACAGATTTTGTCAGATTCCTCTTACTTGAACTTTTCATTCAATAAACTTCAAGGAGAAGTACCGACGGGTGGGGTTTTCAAAAATGCTAGTGCCATATCATTGACAGGAAATGGTTTCCTTTGCGGAGGTGTCCCAGAGTTGCATCTGCCATTATGCCCTACCGGTGAATCAAAACGGGTAAAGAAGCATGTTCTCAAGTTAAGAATCTTAGTCATTTGCTtggttcttttcttcttcctgttGGCTGCTTCATTTACTATGTTTTGgataagaaaaagtaaaaggaaaacatcTACCTTCTCAACAATCGACGGACTTCTCCAGGTTTCTTACAGAAGGATTCTGGAAGCAACAGGTGGTCTTTCACCCAATAACTTGATAGGAGTGGGTAGTTTCGGTTCTGTATACAAAGGAACTATTGACTCAGAGGAAAGAGTAGTAGCTGTGAAGGTTCTCAACCTACAACAGAAAGAAGCTACCAAGAGTTTCTTGGCTGAATGCAATGCCTTGAAAAGAATCAAGCATCGAAACCTTGTCAAAGTTTTGACTTGCTGCTCAAGCATTGATTACAATGGAAACGATTTCAAAGCTCTAGTTTTCGAGTTCATGACAAATGGAAGCTTGGAGAAATGGATACATCCGGAGCAAGGTGAAAATCAATCATTAGACTTTCTTCATAGACTAAATGTTTCAATGGATGTAGCTTCTGCTTTGCAATATCTTCACCACGAATGTGAACAACCAGTTGTTCACTGTGACTTGAAGCCTAGTAATGTTCTCCTTGATTCTGATCTTGTGGCTCATTTGAGTGATTTTGGTTTAGCAAGACTTCTCTTGACTCCGAATCAAGTTTCTGAAAGTAAATCTAGCACCATTGGGTTGAAGGGCTCCGTGGGATATGCAGCTCCAGAATATGGCATTGGAGGAAAAGCTTCAAAGGAGGGTGATGTCTATAGCTTTGGGATCCTTCTGTTAGAGATGTTCACAGGAAGGAGACCCACTGAGGAGATGTTCATGGATGACTTTAATCTTCACAGTTATGTGAATGTTGCATTACCTGAAAAACTTTTGCAAGTTATAGACCCTATTCTTGCCCAGGAAGGAACGGCAGAGCAAAATGGAGAGACCAGTAGCTATCAAACTAACATTAAAAGGTGCATTCTTTCAGTATTGGAGGTTGGACTTACTTGCTCTAAAGAGTCTCCGGaggaaagaatgaaaattgggGATGCCATCCGGCAATTGCAAATGATCAAGAGGGCGGCCTTTCTGTtagaata 3056 0.3776 MKPLKPNSPTLCHVYHQILLLFSLSFIFLLPIPAARALTNETEKMALLKFKESITNDPHGILGSWNGSTHFCNWVGVRCGRKHQRVTALELNGYGFGGLISPYIGNLSFIRSIMLCNNSLSGHIPLEIGRLFRLQDFLLWNNTLGGEVPRSLVNCSQLRILDLTTNHLTGPIPIEFGCLMKLEELYLGINILTGGLPPTLGNISSLVALSVAGNSLEGLIPYEIGCLKKLSKFEIGVNNLSGAIPSSLYNISSMTILSATQNQLGGTLPDNIGTAMWNLQVLELGFNKLSGSVPPSLCNISGLQSVDLGDNNFVGSVPTNFGKLRQLSFLGLWNNHLGHNSWKDWDFLNSLTNCSKLEFFDLACNNVGGILPMAIGNLSNQLSYLFLESNKIHGSIPAEITSLRNLIFLDLENNSFTGTIPTSFGQFRKLQVLILRQNKLSGHIPSSIGNLTRLINLYFDENRLEGSIPEDFENCQNLQKLLISHNNLNGAIPKKIFRISSLIWLNLSHNSLAGRLPHERGNLKNIYSLDLSENVLFGDIPTAIGDCLSLEYLFLQGNFFQGGLPASLASLRGIRILDLSRNNLSGEIPKDLQILSDSSYLNFSFNKLQGEVPTGGVFKNASAISLTGNGFLCGGVPELHLPLCPTGESKRVKKHVLKLRILVICLVLFFFLLAASFTMFWIRKSKRKTSTFSTIDGLLQVSYRRILEATGGLSPNNLIGVGSFGSVYKGTIDSEERVVAVKVLNLQQKEATKSFLAECNALKRIKHRNLVKVLTCCSSIDYNGNDFKALVFEFMTNGSLEKWIHPEQGENQSLDFLHRLNVSMDVASALQYLHHECEQPVVHCDLKPSNVLLDSDLVAHLSDFGLARLLLTPNQVSESKSSTIGLKGSVGYAAPEYGIGGKASKEGDVYSFGILLLEMFTGRRPTEEMFMDDFNLHSYVNVALPEKLLQVIDPILAQEGTAEQNGETSSYQTNIKRCILSVLEVGLTCSKESPEERMKIGDAIRQLQMIKRAAFLLE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03229 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Bva12g03229 1018 ProSiteProfiles Protein kinase domain profile. 713 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03229 1018 Pfam Leucine rich repeat 428 488 IPR001611 GO:0005515
Bva12g03229 1018 Gene3D Phosphorylase Kinase; domain 1 695 794 - -
Bva12g03229 1018 SUPERFAMILY Protein kinase-like (PK-like) 689 1009 IPR011009 -
Bva12g03229 1018 SUPERFAMILY RNI-like 89 377 - -
Bva12g03229 1018 Gene3D Transferase(Phosphotransferase) domain 1 795 1015 - -
Bva12g03229 1018 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Bva12g03229 1018 Pfam Leucine Rich Repeat 405 425 IPR001611 GO:0005515
Bva12g03229 1018 Gene3D Ribonuclease Inhibitor 279 341 IPR032675 -
Bva12g03229 1018 Gene3D Ribonuclease Inhibitor 201 278 IPR032675 -
Bva12g03229 1018 Gene3D Ribonuclease Inhibitor 39 198 IPR032675 -
Bva12g03229 1018 Pfam Protein kinase domain 717 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03229 1018 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 18 1014 - -
Bva12g03229 1018 Gene3D Ribonuclease Inhibitor 342 653 IPR032675 -
Bva12g03229 1018 SMART serkin_6 713 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03229 1018 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 18 1014 - -
Bva12g03229 1018 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Bva12g03229 1018 SUPERFAMILY L domain-like 380 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03229 Bva-Chr12 23202465 23205626 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03229 35 1015 Receptor kinase-like Gene Family AT3G47570 45.482 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g03229 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03229 - - qsu:112010890 1077.39