Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03224 ATGAAGCCTCTCAAGCCTACCTCTCTACCAATGTGTCATGTTTACCATCAAATCTTACTTATGTTCTCTCTGAGTTTTCTATTACTACAGCCAAGCCCTGGCGCACGAGCTCAAACAAATGAGACTGACAAAACGGCATTGCTTCAATTTAAAGAATCAATAACCAAAGACCCACATGAAATATTAGCCTCCTGGGATGACTCAACTCACTTCTGCAATTGGGTTGGAGTAACATGTGGCCGGAAGCACCAGAGAGTCACAGCTTTGGAACTAAACGGCTATGGGTTTGGTGGATTGATATCACCTTATATTGGCAACCTCTCTTTTATCAAATCTATCATGCTCTCCAATAACAGTTTTTCTGGCCATATTCCACCAGAAGTTGGACGTTTGTTCCGTCTTCAACAATTTTCGCTTTGGAATAACACACTCAGCGGAAAAGTTCCAATAAGCTTGGCTAATTGCTCTCAACTCAGAATCTTAGACTTGACAACAAATCATTTAACAGGGTCTATACCTACGGAGTTTGGCTCTTTAATGAAGCTTGAAGAGCTCTACTTGGGAAATAATATTCTCACAGGTGGCCTGCCACCCACCTTAGGGAATATTTcatcacttttaattttttcttcagcGGAAAACGCGTTGGAGGGAGTTATTCCACATGAAATTGGGCATTTGAAAATGTTGTCCATGTTCGAGATTGGCCTTAATAATCTGTCAGGTACATTCCCTTCTTCTCTCTACAATATTTCTTCTATGACCATATTATCAGCTACCCAAAACCAACTAGGTGGTACCCTACCAGACAACATAGGCACCGCAATATGGAATCTCCAGGTTCTTGAACTCGGTTCAAATCAACTGTTTGGGACTGTTCCAGCATCACTATTCAATATTTCTGGTCTTCAAACAGTTGACTTGGGAGATAATAACTTTGTGGGTTCAATTCCAACCAATTTTGGAAACCTTCCACAGCTTTCATTTCTTGGTCTAAGGTACAATAATTTGGGGTATAACTCATGGAAAGATTGGGATTTCTTGAATTCGTTGATAAACTGCAGCAAACTGGAATTGTTTGATCTCTCTGGCAACAATGTCGGGGGCATTCTACCCATAGCTATTGGAAATCTGTCAAACCAACTAAGCTATCTGTATTTACAATCCAACAAGATACATGGCTCCATTCCTGCTGAAATCACAAGTCTACAAAATTTACTCTTATTGAACTTGCAGAGTAACTCTCTCACAGGTACTATTCCCACTTCTTTTGGGCAGTTTCAAAAAATACAAGACTTGAAACTAAGTCACAACAAGATCTCTGGGCATATTCCATCTACCATAGGTAATCTCACCAGGCTCATTAATCTTTTGTTAGATGAGAATAGATTAGAAGGGACCATACCGGCAGTTATTGGGAATTGTCAAAATTTACAAGAGTTGTTAATTTcagataataatttaattggaaCAATTCCTCAGCAGATTTTTcagatttcttctttgatttggCTTAGTTTGTCACACAACTCATTGGTTGGCAGACTACTAGAGGAAATAggtaatttgaaaaatgtcaATTATTTGGATCTCtctgaaaatgttttgttCGGGGACATCCCTACAGCCATTGGAGATTGCTTGAGCCTAgaatatcttttccttcaaGGAAATTTCTTCCAAGGTGGTCTACCAGCATCTCTGGCATCCCTGAGAGGTATTCGAATCCTAGATCTCTCACGAAATAATTTGTCTGGAGAAATTCCAAAAGATCTACAGATTTTGTCAGATTCCTCTTACTTGAACTTTTCATTCAATAAACTTCAAGGAGAAGTACCGACGGGTGGGGTTTTCAAAAATGCTAGTGCCATATCATTGACAGGAAATGGTTTCCTTTGCGGAGGTGTCCCAGAGTTGCATCTGCCATTATGCCCTACCGGTGATTCAAAACGTGTAAAGAAGCATGTTCTCAAGTTAAGAATCTTAGTCATTTGCTtggttcttttcttcttcctgttGGCTGCTTCATTTACTATGTTTTGgataagaaaaagtaaaaggaaaacatcTACCTTCTCAACAATCGAGGGACTTCTCCAGGTTTCTTACAGAATGATTCTGGAAGCAACAGGTGGTCTTTCACCCAATAACTTGATAGGAGTGGGTAGTTTTGGTTCTGTATACAAAGGAACTTTTGACTCAGAGGAACGAGTAGTTGCTGTGAAGGTTCTCAACCTACAACAGGAAGGAGCTACCAAGAGTTTCTTGGCTGAATGCAATGCCTTGAAAAGAATCAAGCATCGAAACCTTGTCAAAGTTTTGACTTGCTGCTCAAGCATTGATTACAATGGAGATGATTTCAAAGCTCTAGTTTTCGAATTCATGGTAAATGGAAGCTTGGAGAAATGGATACATCCGGAGCAAGGTGAAAATCAATCATTAAACTTTCTTCAGAGACTAAATGTTTCAATAGATGCGGCTTCTGCTTTACAATATCTTCACTATGAATGTGAACAATCAATTGTTCATTGTGATTTAAAGTCTAGTAATGTTTTGCTTGATTCTGACCTTGTGGCTCATGTGAGTGATTTCGGTTTAGCAAGACTTCTCTGGACTTCAAATCAAGATTCTCAAGGTCAATCTAGCACCATTGGGTTGAAGGGCTCCGTGGGATATGCAGCTCCAGAGTATGGCATTGGTGGAGAAGCTTCAAAGGAGGGTGATGTCTATAGCTTTGGGATCCTTCTGTTAGAGATGTTCACTGGAAAGAGACCCACTGAGGAGATGTTCATGGACGACTTTCATCTTCACAGTTATGTGAAACTTGCATTACCTGAAAAACTTTTGCAAGTTATAGACCCCATTCTTGCACAAGAAGGAACAGAAGTGCAAAATGGAGAGGCCAGTAGCTATcagactaaaattaaaaagtgcaTTCTATCAGTGTTGGAGGTTGGACTTACTTGCTCTAAAGAGTCTCCAGaggaaagaatgaaaattgggGATGCCACCCTGCAATTGCAAATGATCAAGAGCGCCTTTCtgttagaata 3053 0.377 MKPLKPTSLPMCHVYHQILLMFSLSFLLLQPSPGARAQTNETDKTALLQFKESITKDPHEILASWDDSTHFCNWVGVTCGRKHQRVTALELNGYGFGGLISPYIGNLSFIKSIMLSNNSFSGHIPPEVGRLFRLQQFSLWNNTLSGKVPISLANCSQLRILDLTTNHLTGSIPTEFGSLMKLEELYLGNNILTGGLPPTLGNISSLLIFSSAENALEGVIPHEIGHLKMLSMFEIGLNNLSGTFPSSLYNISSMTILSATQNQLGGTLPDNIGTAIWNLQVLELGSNQLFGTVPASLFNISGLQTVDLGDNNFVGSIPTNFGNLPQLSFLGLRYNNLGYNSWKDWDFLNSLINCSKLELFDLSGNNVGGILPIAIGNLSNQLSYLYLQSNKIHGSIPAEITSLQNLLLLNLQSNSLTGTIPTSFGQFQKIQDLKLSHNKISGHIPSTIGNLTRLINLLLDENRLEGTIPAVIGNCQNLQELLISDNNLIGTIPQQIFQISSLIWLSLSHNSLVGRLLEEIGNLKNVNYLDLSENVLFGDIPTAIGDCLSLEYLFLQGNFFQGGLPASLASLRGIRILDLSRNNLSGEIPKDLQILSDSSYLNFSFNKLQGEVPTGGVFKNASAISLTGNGFLCGGVPELHLPLCPTGDSKRVKKHVLKLRILVICLVLFFFLLAASFTMFWIRKSKRKTSTFSTIEGLLQVSYRMILEATGGLSPNNLIGVGSFGSVYKGTFDSEERVVAVKVLNLQQEGATKSFLAECNALKRIKHRNLVKVLTCCSSIDYNGDDFKALVFEFMVNGSLEKWIHPEQGENQSLNFLQRLNVSIDAASALQYLHYECEQSIVHCDLKSSNVLLDSDLVAHVSDFGLARLLWTSNQDSQGQSSTIGLKGSVGYAAPEYGIGGEASKEGDVYSFGILLLEMFTGKRPTEEMFMDDFHLHSYVKLALPEKLLQVIDPILAQEGTEVQNGEASSYQTKIKKCILSVLEVGLTCSKESPEERMKIGDATLQLQMIKSAFLLE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03224 1017 Pfam Protein tyrosine and serine/threonine kinase 717 934 IPR001245 GO:0004672|GO:0006468
Bva12g03224 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Bva12g03224 1017 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 17 1015 - -
Bva12g03224 1017 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Bva12g03224 1017 Gene3D Transferase(Phosphotransferase) domain 1 795 1014 - -
Bva12g03224 1017 Gene3D Ribonuclease Inhibitor 275 339 IPR032675 -
Bva12g03224 1017 Gene3D Ribonuclease Inhibitor 340 644 IPR032675 -
Bva12g03224 1017 SMART serkin_6 713 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03224 1017 Gene3D Phosphorylase Kinase; domain 1 675 794 - -
Bva12g03224 1017 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Bva12g03224 1017 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Bva12g03224 1017 Pfam Leucine rich repeat 477 536 IPR001611 GO:0005515
Bva12g03224 1017 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 17 1015 - -
Bva12g03224 1017 SUPERFAMILY RNI-like 89 393 - -
Bva12g03224 1017 SUPERFAMILY Protein kinase-like (PK-like) 689 1007 IPR011009 -
Bva12g03224 1017 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Bva12g03224 1017 Gene3D Ribonuclease Inhibitor 192 274 IPR032675 -
Bva12g03224 1017 Gene3D Ribonuclease Inhibitor 39 191 IPR032675 -
Bva12g03224 1017 ProSiteProfiles Protein kinase domain profile. 713 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03224 1017 Pfam Leucine Rich Repeat 181 202 IPR001611 GO:0005515
Bva12g03224 1017 SUPERFAMILY L domain-like 381 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03224 Bva-Chr12 23154911 23158060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03224 39 1014 Receptor kinase-like Gene Family AT3G47570 47.326 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g03224 PK_Tyr_Ser-Thr 7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03224 - - qsu:112023766 1067.37