Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03223 ATGTGGAATCTCCAGTTTCTTGAACTTGgtttaaataaattgtctGGGTCTCTTCCAGCATCAATATGCAATATTTCTCGTCTTCAAACAATTGACTTGGgagataataattttgtggGAACAGTTCCAACAAATTTTGGAAACCTTCGACAGCTTTCAAATCTTGGTTTAAGaaaaagtaaaaggaaaatatctaCCTTCTCAACAATCGAGGGACTTCTCCAGGTTTCTTACAGAAGGATTCTGGAAGCAACAGGTGGTCTTTCACCCAATAACTTGATAGGAGTCGGTAGTTTTGGTTCTGTATACAAAGGAACTTTTGACTCAGATGAAAGAGTAGTTGCTGTGAAGGTTCTCAACCTACAACAGAAAGGAGCTACCAAGAGTTTCTTGGCTGGATGCAATGCCTTGAAAAGAATCAAGCATCGAAACCTTGTCAAAGTTTTGACTTGCTGCTCAAGCGTTGATTACAATGGAAATGATTTCAAAGCTCTAGTTTTCGATTTCATGGTAAATGGAAGCTTGGAGAAATGGATACATCCGGAGCAAGGTGAAAATCAATCATTAAACTTTCTTCAGAGACTAAATGTTTCAATAGATGTGGCTTTTGCTTTGCAATATCTTCGCCATGAATGTGAACAATCAATTGTTCATTGTGACTTAAAACCTAGTAATgttatgcttgattttgaCCTTATGGCTCATGTGAGTGATTTCGGTTTAGCAAGACTTCTCTGGACTTCAAATCAAACTTCTCAAGGTAAATCTAGCACCATTGGGTTGAAGGGCTCTGTGGGATATGCAGCTCCAGAATATGGCATTGGAGGAGAAGCTTCAAAGGAGGGTGATGTCTATAGCTTTGGGATCCTTCTGTTAGAGATGTTCACTGGAAAGAGACCCACTGAGGAGATGTTCATAGACGATTTTCATCTTCACAGTTATGTGAAACTTGCATTACCTGAAAAACTTTTGCGAGTTATAGACCCCATTCTTGCACAAGAAGGAACAGAAGTGCAAAATGGAGAGACCACTAGCTATcagactaaaattaaaaagtgcaTTCTATCAGTGTTGGAGGTTGGACTTACTTGCTCTAAAGAGTCTCCAGaggaaagaatgaaaattgggGATGCCACCCTGCAATTGCAAATGATCAAGAGAGCCTTTCtgttagaata 1178 0.3625 MWNLQFLELGLNKLSGSLPASICNISRLQTIDLGDNNFVGTVPTNFGNLRQLSNLGLRKSKRKISTFSTIEGLLQVSYRRILEATGGLSPNNLIGVGSFGSVYKGTFDSDERVVAVKVLNLQQKGATKSFLAGCNALKRIKHRNLVKVLTCCSSVDYNGNDFKALVFDFMVNGSLEKWIHPEQGENQSLNFLQRLNVSIDVAFALQYLRHECEQSIVHCDLKPSNVMLDFDLMAHVSDFGLARLLWTSNQTSQGKSSTIGLKGSVGYAAPEYGIGGEASKEGDVYSFGILLLEMFTGKRPTEEMFIDDFHLHSYVKLALPEKLLRVIDPILAQEGTEVQNGETTSYQTKIKKCILSVLEVGLTCSKESPEERMKIGDATLQLQMIKRAFLLE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03223 392 Pfam Protein tyrosine and serine/threonine kinase 92 308 IPR001245 GO:0004672|GO:0006468
Bva12g03223 392 SUPERFAMILY Protein kinase-like (PK-like) 63 382 IPR011009 -
Bva12g03223 392 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 57 - -
Bva12g03223 392 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Bva12g03223 392 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 60 390 - -
Bva12g03223 392 Gene3D Ribonuclease Inhibitor 2 76 IPR032675 -
Bva12g03223 392 SUPERFAMILY L domain-like 2 76 - -
Bva12g03223 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Bva12g03223 392 SMART serkin_6 88 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03223 392 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 3 57 - -
Bva12g03223 392 Gene3D Transferase(Phosphotransferase) domain 1 170 389 - -
Bva12g03223 392 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 60 390 - -
Bva12g03223 392 ProSiteProfiles Protein kinase domain profile. 88 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03223 392 Gene3D Phosphorylase Kinase; domain 1 77 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03223 Bva-Chr12 23147267 23149591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03223 1 61 Receptor kinase-like Gene Family AT3G47570 44.262 6.85e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g03223 PK_Tyr_Ser-Thr 9.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03223 - - jre:108988768 448.358