Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03197 ATGACCCCAGTTACTCAGCTTCCCTGTGACAGCGATGGCGTGTGCATGGTTTGCATGCAGAAGCCACCGACCGATGACACCCTCTTCTGTAAGACCTGTGTCACGCCGTGGCACATTGCCTGTCTTCTCGCCAGAGACGGAGCTATCAAAACTCAGTCCGATGGCATGCATTGGGAGTGCCCGGATTGCTCCCCGGTCAAGGATTCTGGTCCGGCCCAGGTTGCTGGCCGGGGGGAGTCTACCGAGCTGATCGCTGCTATAAGAGCGATCGAGTCTGACACTTCCCTCACTGATCAAGAGAAGGCAAGGAGGCGTCAGCAGCTACTTGGTGGGTCGGCGTCCGCGAATTTATCTGATCACGGTGAAGGGAGCTCAAATCCGGGGAGGAACAGTGGGTTTCTAGATATCTTAGATGACGGATTGAACTGTTCCTTCTGCAGGCAGCTTCCCGAGAGGCCCGTTACGACTCCTTGTGGGCACAACTTTTGCTTGAAGTGCTTCCAGAAATGGATTGGACAAGGACATAAAAGTTGTGCTAAGTGTCGTTGTGGAATCCCATCTGGTATGGCTAGCGACCCAAAAATCAATTCTCAGCTTGCTATGGCCATTAGAGTTGCTAAAAGGTCAAGATCAAATGGTGGTGGGGCTGCTGTCCAACCAAGgccttataattatttaaacaatGATGACCGTCCCGACGAAGCATTCACCACAGAGCGAGCCAAGAAGGCGGGAAAGGCAAATGCTTCTAGTGGCAGGATCCTTGTCACAACTCATCATGAACATTTTGGGCCAATTCTGGCAGAGCATGACCCCACAAGGAATCGTGGTATTCTGGTTGGAGACACATGGTTTCATAGGTTGGATTGTAGGCAATGGGGTGTCCATCGTCCCCATGTTGCAGGTATAGCTGGGCAGAGCGGTTATGGTGCACAATCAGTTGCCATTTCCGGAGGCTATGTAGATGATGAGGACCATGGAGATTGGTTCCTTTACACTGGCAGTGGGGGAAAAGACCTTAGTGGCAACAGACGCAATAGAAAAGAGCATTCTTTTGACCAGGAGTTTGAGAGTTCTAATGAGGCACTGAGAGTAAGTTGCCGAAAAGGTTATCCTGTTCGGGTAATAAGgTCTTCCAAGGAGAAAAGCCCTTATGCACCAGCTAGTGGGCTTCGTTATGATGGAATTTATCGAATCGAGAAATGCTGGCGTATAGCTGGAAAACAAGGTCAAAAAGTTTGCAGGTATTTATTTGTCCGATGTGATAATGAGCCTGCACCATGGACAAGTGATGACCATGGAGACCAACCACGCCCCCTGCCTGTAATTGAAGAGTTGGAGCGTGCAATTGATTTTACTGAAAGAAAGGGATCCCCATCATGGGATTATGATGATGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCTCTACCTCCACCACCAAAGAGCACTAAACACAACGAAGATGGAACACAAGTAAAAATAGGCAAGCGGAAAGGGAAAAGGCTTTCTCCGAATGAACAACTTCTGAAAAAATTTAGGTGCTCCCTTTGTTGGAAAGTTTTGACACTCCCTGTCACTACATCTTGTGCTCACAACTTCTGTAAAGCTTGTCTGGAGGAGAGGTTTGCAGGCCAAAGTTATATCAGAAGTAGGACATGTCAAGGGGGACGCTCGCTAAGAGCACAAAAGAATGTTATGAAATGCCCAACATGTTCAATTGACATAACTGAGTTTCTTCAGAATCTACAGGTTAACAGGGAACTTATGGGAATTATTGAATCGCTTCAACATGAAGCTGAAGAAATAGATCAAAATGCTGAAGAATCAAATGAGAAAACTGAAGAAAAAAACCTCTGTGATGCCGGTGACAGTGTTCTTGAGGAACTCAACGACAATGATCTTAATCTGAGAACATCAAAACGACTGAAGATTGATGgggaatttgaattttgccAGATGAATACAGAACCAgacatattttatgaattggATGACAATATAGATAATTCCAATTG 2021 0.4577 MTPVTQLPCDSDGVCMVCMQKPPTDDTLFCKTCVTPWHIACLLARDGAIKTQSDGMHWECPDCSPVKDSGPAQVAGRGESTELIAAIRAIESDTSLTDQEKARRRQQLLGGSASANLSDHGEGSSNPGRNSGFLDILDDGLNCSFCRQLPERPVTTPCGHNFCLKCFQKWIGQGHKSCAKCRCGIPSGMASDPKINSQLAMAIRVAKRSRSNGGGAAVQPRPYNYLNNDDRPDEAFTTERAKKAGKANASSGRILVTTHHEHFGPILAEHDPTRNRGILVGDTWFHRLDCRQWGVHRPHVAGIAGQSGYGAQSVAISGGYVDDEDHGDWFLYTGSGGKDLSGNRRNRKEHSFDQEFESSNEALRVSCRKGYPVRVIRSSKEKSPYAPASGLRYDGIYRIEKCWRIAGKQGQKVCRYLFVRCDNEPAPWTSDDHGDQPRPLPVIEELERAIDFTERKGSPSWDYDDEKGCWLWKKPPPLPPPPKSTKHNEDGTQVKIGKRKGKRLSPNEQLLKKFRCSLCWKVLTLPVTTSCAHNFCKACLEERFAGQSYIRSRTCQGGRSLRAQKNVMKCPTCSIDITEFLQNLQVNRELMGIIESLQHEAEEIDQNAEESNEKTEEKNLCDAGDSVLEELNDNDLNLRTSKRLKIDGEFEFCQMNTEPDIFYELDDNIDNSN 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03197 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 209 IPR013083 -
Bva12g03197 673 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 632 IPR045134 -
Bva12g03197 673 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Bva12g03197 673 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Bva12g03197 673 Gene3D - 244 440 IPR036987 -
Bva12g03197 673 SUPERFAMILY PUA domain-like 249 440 IPR015947 -
Bva12g03197 673 MobiDBLite consensus disorder prediction 209 232 - -
Bva12g03197 673 ProSiteProfiles Zinc finger RING-type profile. 516 574 IPR001841 -
Bva12g03197 673 Coils Coil 587 618 - -
Bva12g03197 673 SMART ring_2 516 573 IPR001841 -
Bva12g03197 673 SMART ring_2 143 181 IPR001841 -
Bva12g03197 673 SMART ring_2 15 63 IPR001841 -
Bva12g03197 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 83 IPR013083 -
Bva12g03197 673 SMART G9a_1 268 424 IPR003105 -
Bva12g03197 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 623 IPR013083 -
Bva12g03197 673 SUPERFAMILY RING/U-box 509 599 - -
Bva12g03197 673 Pfam RING-type zinc-finger 516 555 IPR027370 -
Bva12g03197 673 ProSitePatterns Zinc finger PHD-type signature. 15 63 IPR019786 -
Bva12g03197 673 Pfam SAD/SRA domain 276 423 IPR003105 -
Bva12g03197 673 SUPERFAMILY RING/U-box 134 187 - -
Bva12g03197 673 MobiDBLite consensus disorder prediction 110 131 - -
Bva12g03197 673 MobiDBLite consensus disorder prediction 475 501 - -
Bva12g03197 673 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Bva12g03197 673 ProSiteProfiles YDG domain profile. 273 420 IPR003105 -
Bva12g03197 673 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 632 - -
Bva12g03197 673 SUPERFAMILY FYVE/PHD zinc finger 8 67 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03197 Bva-Chr12 22949257 22953070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03197 1 605 C2H2 Transcription Factor Family AT5G39550 55.229 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03197 K10638 - egr:104433733 817.764