Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03194 ATGGGTCGCTCCCGCGCTGCTTCGCGCCAACATGATGATTACCCCAACAAAAGATccaagaggaaaagaaattcaaatgcaGAGAATTTAGAAACTTCTTCTACAGTCCTAGGAATAAGGGAAGGGAAAGCATCTCTATATCACTGCAATTATTGCAACAAAGATATTTCAGGGAAGGTTCGCATTAAGTGTGCAGTATGTCAAGATTTTGATCTTTGCATAGAATGCTTCTCTGTTGGAGCTGAGCTGACACCCCACAAAAGCAATCATCCATATAGGGTTATGGACAATCTATCTTTTCCACTTATATGTCTAGACTGGAGTGCAGATGAAGAGATGTTACTTCTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGACTCAAGTTGCAGAATATATTGGAACAAAGAGCAAATCTCAGTGTATTGACCACTATAATGCTGTATATATGAATTCACCATGCTTTCCTCTCCCTGATTTGTATCATATAATGGGAAAGAGCAGAGAGGAACTCCTTGCCATGGCCAAGGAACCAGGTGAAATTAAGAAAGAGTATCCTCCAACTGGTGATCTTACACTGAAGGAAGAGCCTCCAAACTTTCAAGAAGCTAAGATAAAAGAACCtgctaataaaaaattgtcaagCTCCACTTCAGGTACTGGTAAGGGTTCAGTATGTGGCAAAACATACTCAAATGCCATTAAGAAGACTTCCAACAAGTCCTCAACTAATGATGGAGTTAAAGAATCTCCAGCAGATGAGAGCACTGGAGAGATGAAACTTAAATTGTTTGGGGAAGATGGACCTTCATTGATAGAGTTGAGTGGTTACAATTTTAAGAGGGGGgagtttgaaattgaatatgACAATGACGCAGAACAAATACTGGCAGATATGGAATTTAAGGACAGTGATACTGAAGCTGAACATGAACTGAAACTACAGGTTCTTCATATCTACTCAAGAAGGCTAGATGAACGGAAACGTAGAAAGAATTTTAtacttgaaagaaatttacttTATCCTGACCCTTTTGAAAATTCTCTCTCACCTGAAGAGCGGCAAATATGCCAGCGCTACAAGGTTTTCATGCGGTTTCACTCAAAAGAAGAGCATATGGAGTTGCTAAAAAGTATCATCGAGGAACATCGTCTTGTCAAAAGAATACAAGATCTTCAGGAAGCACGAGCTGCTGGCTGTCGAACATCTGCCGaagcacatatatatattgatcagAAGAGGTCAAAGGAAGCTAAACAAAGTGCTTCTAGAGAAAGTGGTCAGGCTGGTTGTATGGGGGGTAAAACCTTACCAAAGTCAAATAATCTCAAAAAAGAACTTGACGACAGCCATCGGGGAGTTCATAAAGTAACTGCTAGTCCATTTTCTGGCAGCAAGGAGTCACTCAAGACAACTCAAGCTCTCTCGACGTCTCTTGATGATTGGGATGTCACAGGATTTCCCGGGGTTGAATCCCTATCAGAATCTGAGAAAAAGCTTTGCAGTGAGATCAGAATACTTCCATCGCACTATCTCAACATGCTGCAGGTCATGTCAATAGAAATTTGGAAGGGCAGAGTGACCAAGAAATCCGATGCCCATACCCTCTTCAAGGTTGAACAGAGTAAAGTAGATAGAATTTATGACATGCTTGTGAAAAAGGGTATTGCTCAAGcatg 1682 0.3876 MGRSRAASRQHDDYPNKRSKRKRNSNAENLETSSTVLGIREGKASLYHCNYCNKDISGKVRIKCAVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICLDWSADEEMLLLEGIEMYGFGNWTQVAEYIGTKSKSQCIDHYNAVYMNSPCFPLPDLYHIMGKSREELLAMAKEPGEIKKEYPPTGDLTLKEEPPNFQEAKIKEPANKKLSSSTSGTGKGSVCGKTYSNAIKKTSNKSSTNDGVKESPADESTGEMKLKLFGEDGPSLIELSGYNFKRGEFEIEYDNDAEQILADMEFKDSDTEAEHELKLQVLHIYSRRLDERKRRKNFILERNLLYPDPFENSLSPEERQICQRYKVFMRFHSKEEHMELLKSIIEEHRLVKRIQDLQEARAAGCRTSAEAHIYIDQKRSKEAKQSASRESGQAGCMGGKTLPKSNNLKKELDDSHRGVHKVTASPFSGSKESLKTTQALSTSLDDWDVTGFPGVESLSESEKKLCSEIRILPSHYLNMLQVMSIEIWKGRVTKKSDAHTLFKVEQSKVDRIYDMLVKKGIAQA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03194 560 SMART sant 103 152 IPR001005 -
Bva12g03194 560 CDD SANT 107 147 IPR001005 -
Bva12g03194 560 ProSiteProfiles SWIRM domain profile. 474 560 IPR007526 GO:0005515
Bva12g03194 560 Gene3D - 40 95 IPR043145 -
Bva12g03194 560 SMART zz_5 43 87 IPR000433 GO:0008270
Bva12g03194 560 MobiDBLite consensus disorder prediction 413 452 - -
Bva12g03194 560 Gene3D - 102 152 - -
Bva12g03194 560 MobiDBLite consensus disorder prediction 1 27 - -
Bva12g03194 560 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Bva12g03194 560 CDD ZZ_ADA2 47 95 IPR041983 -
Bva12g03194 560 MobiDBLite consensus disorder prediction 237 251 - -
Bva12g03194 560 SUPERFAMILY RING/U-box 47 110 - -
Bva12g03194 560 Gene3D - 475 559 IPR036388 -
Bva12g03194 560 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Bva12g03194 560 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 559 IPR034318 GO:0003713|GO:0006357|GO:0035065
Bva12g03194 560 SUPERFAMILY Homeodomain-like 471 557 IPR009057 -
Bva12g03194 560 MobiDBLite consensus disorder prediction 211 225 - -
Bva12g03194 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 559 - -
Bva12g03194 560 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Bva12g03194 560 MobiDBLite consensus disorder prediction 202 225 - -
Bva12g03194 560 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Bva12g03194 560 PIRSF Txn_adaptor_ADA2 35 560 IPR016827 GO:0003713|GO:0006357|GO:0035065
Bva12g03194 560 MobiDBLite consensus disorder prediction 237 259 - -
Bva12g03194 560 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Bva12g03194 560 Pfam Myb-like DNA-binding domain 107 147 IPR001005 -
Bva12g03194 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Bva12g03194 560 MobiDBLite consensus disorder prediction 1 29 - -
Bva12g03194 560 Pfam Zinc finger, ZZ type 47 86 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03194 Bva-Chr12 22891810 22899989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03194 1 560 EF-hand Containing Proteins AT3G07740 52.686 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g03194 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03194 K11314 - gmx:100779424 765.377