Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03181 atGTCTGTCAATCGAAAGCTCTCTGGCTTAAATGGTAGGTTGCCAGCAAATTTAAAGCCATGGAAGGCAAATGAGGCTTTGCAAGGACCGAATTCTCTCAGAAAATACAGGAGAAAGTCCTTGTTGTGGtggttttttggttttgttgctATATTAAGCTTGTCGTTTTTCTTCAGTTTCAATAATGAATCTTTGGTGAGGAAAGAGAAGGTTTGGGATGCTTGTGAGGAAAGAGCTCGAATCTTGCTGCAACGTTATAATGTAAGCAGAAAGAGATTTCGTGCTTTGGCTTCTCTATTCTCTGGATCAGATCAGTGTATTGATGAAAGAGAACTACAAAAGCTGTTAACCAATGGTATAGATGGTTCACAAGTAAAATGTCCAGAGAAGCAGTTATCGGAGGACCGTCCATGTGTTGCTGACAACGTAGAATCCATAGAACAATGCCCAATCCTTGATGATTATGCACAGAGAAAGCTTGAATTGTCATTGCTAGTGGACAAGTCTGTATCAGTGGCTTTACAGTCTGAACATTCATCCAATTTGGTTAATCATTTGTTCTGTGGAAAGAACATATTGCAGTCATGGCTACTGGAGGTCTTTGCAATGCTGAGTTCTGGGAGTCTGTCTAGTTTGGTTAAAGGAAGTTGGTGGGTCCTTCTTGGACTTACAATGTGCTACAAGTTCTCTGGTTTCCATCTATTATGGAGGAGTCAAAATCAGAAGGTGGTTCAGCGGCAGCCAAGTGCTCATCAGAAGCAGCTGCAGCAACTTTCTGTCCATACTCCTCCAAGGGGTGCTGGAAGGTGGAGGAAAAAGTTCctagttttgtttgtttcactTGGAATACTTGGGTcaatttggttattttggCACTTAAATGAGGACATTAAgcttagaagaaaagaaatgcttGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAGGACCAGTTTAACGTGAGCATGAACCATGTTCATGCTTTGGCTGTTCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTACAATTGATCAGAAAACATTTGGAGAATATACGGAGATGACTGCTTTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTCTGAAAGTTCCTCACTCTCTTAGGGATCAATTTGAGAAGGAGCATGGATGGacaattaagaaaatggaaactGAGAATGAGACACTAGTTCAAGATTGTATTCCAGAAAAGTTGGATCCTGCACCCATTCAAGATGAATATGCACCTGTCATATTTGCTCAGGAAACTGTTTCCCATATTGTATCTATTGACATGATGTCAGGAAAGGAAGACCATGAGAATATCTTGCGAGCTAGGGCATCTGGAAAGGGAGTGCTGACATCTCCTTTTAAACTACTAAAGTCCAATCATGTCGGTGTTGTTCTTACATTTGCTGTATATAACACTGATCTTCGTCCAGATGCTACACCAGAGCAGCGAATTGAAGCTACAGCTGGGTATTTGGGTGCATCATATGATGTTCCATCACTGGTGGACAAGCTTTTGCACCAACTAGCCAGCAAACAAACAATTGTTGTAAATGTTTATGATACAACTAATGCATCTGCCCCCATTACCATGTATGGTACTGATGTTGCTGATACTGGCCTACCATTTATAAGCAATCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCATTGCAGGTTCAAGCAGAAACCTCCATTACCTTGGACAGCAATCAATGCATCAGCAGGAGTACTTGTTATCACTCTGCTTGTTGGCCATATTTTTTATGCTGCAATAAATAGAATAGCAAAAGTGGAGGATGATTACCGTAAAATGATGGAGCTTAAAGTTCGTGCTGAAGCTGCAGATGTTGCAAAATCTCAGTTTCTTGCAACGGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTTGATGAAAACCAGATGGATTTTGCTGAGACTGCTCATAGAAGTGGTAAAGATCTTATATCAGTGATAAGTGAAGTTCTTGAGCAGGCTAAGATTGAGGCCGGcaaacttgaacttgaagcTGTAGCTTTTGATCCACGTGCTATTTTAGATGAAGTTCTATCACTTTTCTCAGGAAAATCTGATGAGAAAAGAATTGAGTTGGCTGCTTCTGTGTCCAATCAAGTGCCTGAAGTTGTCATTGGTGATCCTAAACGATTCCGTCAAACAATTACTAATCTTGTGGGGAACTCGCTTAAGTTCACTCTCGACAGAGGACATGTGTTTGTCTCAATCCATCTGGCAGATGAACTAAGGAGCCCAGTTTATATTATGGATCCAGTGCTGAGACAAGGTTTAAACCTGGATCAGGACATGCCAGACAGAAGTTATAACACATTGAGTGGGTTTCCTGTAGTCAACAGATGGAAAAGCTGGGAAAACTTCAAAAAGCTAAGCAGCATAAATCCGATAGATGAGCCTGAAACTATTCAGTTATTAGTAACAGTTGAGGATACAGGTATAGGAATTCCCATAGATGCACAAAGCCGCATATTCACGCCTTTCATGCAGGCCGATAGCTCCACCTCGCGAACCTACGGTGGGACTGGAATAGGACTGAGCATTAGTAAATGTCTAGTTGATCTCATGGGAGGAGAAATTGGGTTTGTAAGTGAACCTGGTGTTGGCAGTACTTTTACATTCACTGGAATTTTCAGAAAAGGAGAAACCACATCTTTGGATGCCAAGTGGCAGCAGTACTCTCCTCATACTTCAGAGTTCCAAGGATTGAGAGCACTAGTGGTAGATGGAAGAAACATCCGAGCTGAGGTCACAAGATATTATCTGCAGAGGTTGGGGATGTCTGTGGATGTAACTGTTAGTCTGGAATCAGCATACTCCTGTCTATCTAGTAACAAGAGtatGTCTACACAGTTCGCCATGATGCTTTTAGAAAAGGATGTTTGGGATAAGGAACATAGCATATTATGTTCCATCAAGAAACACAGACAGAATGGTATCAAAGATGATCCAATAAATTTTCCCAAGATTTTTCTTATGGCCACCCAACTTAGTCCCAATGAACGTGATGAGCTAGATTCTGCTGGTGTTGTAGATTATATACTGGTAAAACCTCTTTGGCTTAGTGATGTAGTTCGCTACTTTAGAGAAGCCCTCGGAAgtgaaaaaagacaaatgcaTAGAAAGAAAGCATCAAATTTGGGGGACTTGCTAACGCAGAAACGAATTTTGGTGGTTGATGACAATGCAGTGAACAGAAAAGTTGCAGATGGGGTCTTGCAGAGATATGGGGCAATAGTTACCTGTGTGAATGGGGGCAAGGCTGCTCTAAAGATGCTTAATCCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGTTACATGGCGAGTCCGCTGTCTGGAGAATGTGGTAAATGAGAAAATTGCATCTGGCAAAGCATCAGCTGAGATGTTTGGTAATGTGACTTATTGGCACACACCAATATTAGCTATGACAGCTGATACAATTCAGGCTACAAGTGAGGAGTGCAGTAAGTGTGGGATGGATGGTTATGTGGCAAAGCCATTTGAAGAAGAACAGCTCTATACAACAATGGAACAATTCTTTGAACCCGATTCATA 3683 0.4021 MTTGFDSASSEHSSFNNESLVRKEKVWDACEERARILLQRYNVSRKRFRALASLFSGSDQCIDERELQKLLTNGIDGSQVKCPEKQLSEDRPCVADNVESIEQCPILDDYAQRKLELSLLVDKSVSVALQSEHSSNLVNHLFCGKNILQSWLLEVFAMLSSGSLSSLVKGSWWVLLGLTMCYKFSGFHLLWRSQNQKVVQRQPSAHQKQLQQLSVHTPPRGAGRWRKKFLVLFVSLGILGSIWLFWHLNEDIKLRRKEMLANMCDERARMLQDQFNVSMNHVHALAVLVSTFHHGKHPSTIDQKTFGEYTEMTAFERPLTSGVAYALKVPHSLRDQFEKEHGWTIKKMETENETLVQDCIPEKLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDHENILRARASGKGVLTSPFKLLKSNHVGVVLTFAVYNTDLRPDATPEQRIEATAGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLPFISNLDFGDPLRKHEMHCRFKQKPPLPWTAINASAGVLVITLLVGHIFYAAINRIAKVEDDYRKMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDFAETAHRSGKDLISVISEVLEQAKIEAGKLELEAVAFDPRAILDEVLSLFSGKSDEKRIELAASVSNQVPEVVIGDPKRFRQTITNLVGNSLKFTLDRGHVFVSIHLADELRSPVYIMDPVLRQGLNLDQDMPDRSYNTLSGFPVVNRWKSWENFKKLSSINPIDEPETIQLLVTVEDTGIGIPIDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGVGSTFTFTGIFRKGETTSLDAKWQQYSPHTSEFQGLRALVVDGRNIRAEVTRYYLQRLGMSVDVTVSLESAYSCLSSNKSMSTQFAMMLLEKDVWDKEHSILCSIKKHRQNGIKDDPINFPKIFLMATQLSPNERDELDSAGVVDYILVKPLWLSDVVRYFREALGSEKRQMHRKKASNLGDLLTQKRILVVDDNAVNRKVADGVLQRYGAIVTCVNGGKAALKMLNPPHNFDACFMDLQMPEMDGFEVTWRVRCLENVVNEKIASGKASAEMFGNVTYWHTPILAMTADTIQATSEECSKCGMDGYVAKPFEEEQLYTTMEQFFEPDS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03181 1182 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 569 648 IPR036097 GO:0000155|GO:0007165
Bva12g03181 1182 CDD HisKA 582 643 IPR003661 GO:0000155|GO:0007165
Bva12g03181 1182 Pfam CHASE domain 300 494 IPR006189 -
Bva12g03181 1182 CDD REC_hyHK_CKI1_RcsC-like 1042 1174 - -
Bva12g03181 1182 SMART HKATPase_4 694 866 IPR003594 -
Bva12g03181 1182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 637 861 IPR036890 -
Bva12g03181 1182 Gene3D - 1035 1181 - -
Bva12g03181 1182 Gene3D - 882 1024 - -
Bva12g03181 1182 SUPERFAMILY CheY-like 885 1018 IPR011006 -
Bva12g03181 1182 ProSiteProfiles Histidine kinase domain profile. 589 866 IPR005467 -
Bva12g03181 1182 SUPERFAMILY CheY-like 1038 1178 IPR011006 -
Bva12g03181 1182 PANTHER HISTIDINE KINASE 2 214 1179 - -
Bva12g03181 1182 Coils Coil 559 579 - -
Bva12g03181 1182 SMART REC_2 1040 1174 IPR001789 GO:0000160
Bva12g03181 1182 Pfam His Kinase A (phospho-acceptor) domain 582 647 IPR003661 GO:0000155|GO:0007165
Bva12g03181 1182 ProSiteProfiles CHASE domain profile. 297 521 IPR006189 -
Bva12g03181 1182 CDD HATPase_EvgS-ArcB-TorS-like 699 861 - -
Bva12g03181 1182 PRINTS Bacterial sensor protein C-terminal signature 809 819 IPR004358 GO:0016310|GO:0016772
Bva12g03181 1182 PRINTS Bacterial sensor protein C-terminal signature 850 863 IPR004358 GO:0016310|GO:0016772
Bva12g03181 1182 PRINTS Bacterial sensor protein C-terminal signature 791 805 IPR004358 GO:0016310|GO:0016772
Bva12g03181 1182 PRINTS Bacterial sensor protein C-terminal signature 826 844 IPR004358 GO:0016310|GO:0016772
Bva12g03181 1182 ProSiteProfiles Response regulatory domain profile. 890 1018 IPR001789 GO:0000160
Bva12g03181 1182 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 694 861 IPR003594 -
Bva12g03181 1182 Gene3D - 16 58 - -
Bva12g03181 1182 Gene3D - 248 300 - -
Bva12g03181 1182 Gene3D CHASE domain 301 528 IPR042240 -
Bva12g03181 1182 SMART HisKA_10 582 647 IPR003661 GO:0000155|GO:0007165
Bva12g03181 1182 Gene3D - 646 865 IPR036890 -
Bva12g03181 1182 PANTHER TWO-COMPONENT HISTIDINE KINASE 214 1179 - -
Bva12g03181 1182 Gene3D - 553 645 - -
Bva12g03181 1182 Pfam Response regulator receiver domain 1042 1173 IPR001789 GO:0000160
Bva12g03181 1182 ProSiteProfiles Response regulatory domain profile. 1041 1178 IPR001789 GO:0000160
Bva12g03181 1182 SMART CHASE_2 297 496 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03181 Bva-Chr12 22757405 22766695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03181 28 1180 Miscellaneous Gene Families AT5G35750 60.224 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g03181 CHASE 2.1e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03181 K14489 - gmx:100805107 1735.7