Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03179 ATGCAAGCATCAGAACATCATAGGAGTTCTGAAATGTATTATCAGCCAATGCAACAAATTGAGGCCTACTGCTTGCCACAGTATCGGAAATTGAATCAGTTTTACTTCATTGATGCAAATCATGGAAGCCAATTCTCAACTCCAAGTTCTGAACTTTACTGCACCTTGGAATCATCCTCAGCAACAACCTGCAGTTTCCCTGTTTACAACTCTCCTTCAACTGTTACTTTTTCACCTAATGGAAGCCCAATGTCACAACAAGATTCTCAGTCTTATTCTTACCCACCTGACCAGTACCATTCCCCTGACAATGCCTATGGCTCTCCGATGAGTGGATCCTGTGTTACCGAAGATTTTAGCTTCAAGCACAAGCTAAGAGAGTTGGAGACTGTGATGTTGGGCCCTGATTCTGATAACCTTGACAGCTACAGCAGTGCCTTGAAGAATGGAACCAACATTGCCTCACTTGAGATGGATAGCTGGAGACAAACAATGATGGCGATTTCTAGTGGGGACCTAAAACAGGTCCTAGTTGCATGTGCTAAAGCAGTTGCAGACAATGATTTGCTAATGACTCAATGGTTGATGGATGAACTGAGGCAGATGGTGTCAGTTTCTGGTGAACCAATTCAAAGGTTAGGAGCTTACATGCTGGAAGGGCTCGTAGCTCGGTTATCTGCTTCTGGAAGTTCAATCTACCAAGCCTTGAGGTGCAAGGAACCAGCAAGTGCTGACCTCCTCTCTTACATGCACATACTTTATGAGGTTTGCCCTTACTTCAAGTTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAACATGAGGACCGAGTTCATATCATTGATTTCCAAATTGGTCAAGGAAGCCAATGGGTGACTCTAATTCAAGCTTTTGCAGCTAGGCCTGGGGGGCCACCCCATATCAGGATTACAGGTATTGATGATTCAACATCAGCTTACGCGCGTGGAGGAGGACTACATATAGTGGGAAAGAGATTATCCAAGCTTGCTGAGAAATTTAAGGTCCCATTTGAATTTCATGCTGCTGCAATGTCTGGTTGTGATGTTCAGCTAGACAACCTAGGAGTTCGACCGGGGGAGGCTTTAGCTGTCAACTTTGCATTCATGCTACACCACATGCCTGATGAGAGTGTCAGCACTCAGAATCACAGAGACAGACTATTGAGGCTGGTGAGGCGGCTCTCCCCAAAGGTGGTGACACTTGTCGAGCAAGAATCTAACACGAACACTGCTGCATTCCTTCCCCGATTCGTGGAAACTCTGGACTATTACACATCCATGTTTGAGTCAATAGATGTGACTCTCCCAAGGGAGCGTAAAGAGAGAATCAATGTGGAGCAGCATTGCCTGGCAAGAGATGTAGTTAACATTATAGCTTGTGAAGGGGTTGAGAGGGTGGAAAGGCATGAGCTACTTGGGAAATGGAGGTCAAGATTTGCAATGGCTGGTTTCTCTCCTTACCCTTTGAGCTCATTGGTGAATGGCACCATCAAGAAATTGCTTGAGAACTACTGTGACAGATATAGACTTGAAGAGAGAGATGGGGCTCTCTATCTTGGTTGGatgaatagagatttggttgCTTCTTGTGCATGGAAGTG 1631 0.4482 MQASEHHRSSEMYYQPMQQIEAYCLPQYRKLNQFYFIDANHGSQFSTPSSELYCTLESSSATTCSFPVYNSPSTVTFSPNGSPMSQQDSQSYSYPPDQYHSPDNAYGSPMSGSCVTEDFSFKHKLRELETVMLGPDSDNLDSYSSALKNGTNIASLEMDSWRQTMMAISSGDLKQVLVACAKAVADNDLLMTQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYQALRCKEPASADLLSYMHILYEVCPYFKFGYMSANGAIAEAMKHEDRVHIIDFQIGQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGKRLSKLAEKFKVPFEFHAAAMSGCDVQLDNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRRLSPKVVTLVEQESNTNTAAFLPRFVETLDYYTSMFESIDVTLPRERKERINVEQHCLARDVVNIIACEGVERVERHELLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLENYCDRYRLEERDGALYLGWMNRDLVASCAWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03179 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Bva12g03179 543 MobiDBLite consensus disorder prediction 77 103 - -
Bva12g03179 543 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 543 - -
Bva12g03179 543 Pfam GRAS domain family 173 543 IPR005202 -
Bva12g03179 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 543 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03179 Bva-Chr12 22741264 22744538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03179 12 543 GRAS Transcription Factor Family AT5G48150 66.292 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva12g03179 GRAS 5.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03179 - - gmx:100808300 929.087