Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03174 ATGCAATCAGAAAATGGCAAGTTATTTATTGGTGGAATATCATGGGATACAAATGAAGAGCGACTTAGAGAGTATTTCAGTACTTACGGGGAAGTTGTGGAAGCAGTAATTATGAAGGATCGCACAACAGGTAGGGCCCGTGGATTTGGTTTTGTTGTGTTTGCAGACCCAGCTGTTGCAGAGATTGTCATCAAAGAAAAGCACAACATTGATGGAAGGAtgGTTGAGGCAAAGAAGGCTGTTCCTCGGGATGACCAGAATGTACTGAGTAGAAGCAGTGGTAGTATCCATGGTTCTCCTGGTCCAGGCCGCACTAGAAAGATATTCGTTGGAGGTTTAGCATCCACAGTTACAGAAAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATTACTTATGATTCTGAGGAAGCTGTGGACAAGGTCTTACTTAAGACTTTTCACGAACTTAATGGTAAGATGGTCGAGGTCAAACGGGCTGTTCCTAAAGAGTTATCACCAGGACCAAGCCGTAGTCCACTTGGTGGATATAATTATGGTCTGAACAGGGTGAATAGCTTTCTAAATGGCTTCACTCAAGGATACACTCCAAGTACTGTTGGAGGATATGGACTTAGATTGGATGGTAGATTTAGTCCTGTTGCTAGTGATCGAAGTGGTTTTCCTCCTTTTGGATCTGGTTATGGAATGAGTATGAATTTTGAACCTGGTTTAAGCCCTGGATTTGGAGGAAATGCAAATTTCAATAGTAACCTTAGCTATGGCCGGGGATTAAATCCTTATTATTTTGGAAGTTCAAATAGGTTTGGTGGTCCAGTTGGGTATGACAGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGTAATGGTGGTCTTAATTATGGAACTAGCTCTGCAAATTCCAGCGCATACTTGGGATCAGGAAGTGGTAACATTGGAGGAAACACCTTTGGCAATGCAGGAGTCAACTGGGGTTCTTCAGCCATCTCTGGTCAAGGTGGAGGAAACAATGTGTCACAGAGTAGCAGCAACCTTGGCTATGGAGGTGGTGACAACAGTTATGGTTTGGGAAGTGGAAGAAGCACTGGTACTAGTGTTGCCCCAACATCATCATACTCTGCATCAAATGGTGGTATTGATGGGGCTTTTGCTGATTTTTACAATAGTAGTTCAGCTTATGGGGACCCCACTTGGCGGTCCTCAAATTATGAGCGGGATGGGTCCGGTTCCTTTGGTTATGGGCTTGGCAGTGCAGCTTCAGATGTTTCAGGAAAAGCTTCTCCTGGTTATGTTGGTGGTTATACTGTTTATAAGAGACAGCCTAATAGGGGAATCTCTACATA 1427 0.431 MQSENGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGLNRVNSFLNGFTQGYTPSTVGGYGLRLDGRFSPVASDRSGFPPFGSGYGMSMNFEPGLSPGFGGNANFNSNLSYGRGLNPYYFGSSNRFGGPVGYDSGNGGNNSFFSSVTRNLWGNGGLNYGTSSANSSAYLGSGSGNIGGNTFGNAGVNWGSSAISGQGGGNNVSQSSSNLGYGGGDNSYGLGSGRSTGTSVAPTSSYSASNGGIDGAFADFYNSSSAYGDPTWRSSNYERDGSGSFGYGLGSAASDVSGKASPGYVGGYTVYKRQPNRGIST 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03174 475 Gene3D - 103 189 IPR012677 -
Bva12g03174 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva12g03174 475 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Bva12g03174 475 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bva12g03174 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva12g03174 475 Gene3D - 4 88 IPR012677 -
Bva12g03174 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bva12g03174 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Bva12g03174 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Bva12g03174 475 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Bva12g03174 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bva12g03174 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 474 - -
Bva12g03174 475 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Bva12g03174 475 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03174 Bva-Chr12 22698425 22703747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03174 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 27.215 1.04e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03174 K14411 - gmx:100795907 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00573 12 7620050 7623123 Bva12g03174 12 22698425 22703747 BWGD