Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03151 ATGGGTCGTGGAAGACTAGTTATAGAACCCCTAAACAACGAGAAAGCTCGTAATGCATCTTTTGTCAAGAGAAAGACGGGTTTAATCAAGAAAGCCTACGAGCTTTCCACTCTTTGTGGCGTTGATCTTTGTCTCCTCATCTATGGCCCTGAACCAAACGCTCAACCTGAGACTTGGCCTCTAGACCCTGCCTTGGTGCACCGCATTATCGAGAAATATCACGACAAGATCTCCGAGAGACGCCCGAAGCACTATGATGTGCAAGATTTCTACAAGGATAGGTTGAACAAAGTTGAAGCTGAGAttatgaaaacaagaaaagattacCTCAAGCTCTTGTATCCAACTTGGGATGAACGTTTCAATATGCTAGATGAGGCAACACTTAGAAATTTTATCAGTTATTTGGATTCAAAGATTGATGCTTGCAATCAAAGGATAAGCATGCAGAAACGACATCGTTACATAACGGAGAAAAGGGAACAGTTGGCAATTATTCCTCCTCCCTGCTTGGATTCAAACCGAAGCCACCTCAATTTGATAGCACACAACATGATGGTTAAAGCTCAATTTTCTCCACTTCCCATGAATCCACTTGTACTTCATCAAAATCAGCTTGGTGAGATTTCTTTCTCCAAGCctcaatttgataaaaatcttATGCAGTTGATGGACATGAATAATGGGATAGTGGGTATTGGTGCTATTAATTTTGATCCAAGAACTGCTGCTGTTGTTGAGGgtgaagttaaaaataatcagAACTCTCAAGCTGGTTTGGAGAACTTCTCCTCTCTCCCACCAGGGTTTCAGATGGAGGACAACCATCCAATGCTTCAAGCTCAGATGTTCAACCACATGAACAAAGGAAATGGACCCAAAATTTG 887 0.3991 MGRGRLVIEPLNNEKARNASFVKRKTGLIKKAYELSTLCGVDLCLLIYGPEPNAQPETWPLDPALVHRIIEKYHDKISERRPKHYDVQDFYKDRLNKVEAEIMKTRKDYLKLLYPTWDERFNMLDEATLRNFISYLDSKIDACNQRISMQKRHRYITEKREQLAIIPPPCLDSNRSHLNLIAHNMMVKAQFSPLPMNPLVLHQNQLGEISFSKPQFDKNLMQLMDMNNGIVGIGAINFDPRTAAVVEGEVKNNQNSQAGLENFSSLPPGFQMEDNHPMLQAQMFNHMNKGNGPKI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03151 295 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bva12g03151 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 58 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 4 246 - -
Bva12g03151 295 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 PANTHER MADS BOX PROTEIN 4 246 - -
Bva12g03151 295 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 CDD MADS_SRF_like 2 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva12g03151 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva12g03151 295 Coils Coil 88 108 - -
Bva12g03151 295 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03151 Bva-Chr12 22568294 22569181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03151 1 174 Type I MADS-box Gene Family AT5G55690 33.846 1.98e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva12g03151 SRF-TF 5.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03151 - - lang:109350953 219.55