Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03122 ATGCTCCTGCAGGAGCGTTCTGATGAAATCACCTCCACAGGCGACACTCTTTCACAGAGTCTCGGACGCACAAGCAACAAATATTGGGAAACAGCTTCCCAGCACGACAGCAACAGACGGAAAAACGCAGCAGAAACGTTAGCACTCTGGTACAGAACTACCAAGGGACGGAGAGGTCGAGATTGGGAAGAAATGGCAGCAGAAGTTGCAGTGAAAACTCTTGTGATCATTATTATTGGATCTGGGCTTCAAGAATTGCTGACTCGTCTCAATGAGTCTGAGATTTCGCCTGGCGAATATGACCCTGCACGTTTGGCTGATCTGTTTCAGCAATATGCATCAAAGACGATAGAGTTACCCTTAACCAAGCCTGGATCAAACATCAATCGCAATTCTTCCTCTGCCGGGAGTTATGCCTGTTGTATACTACCAGCAGTTATTCTAGCAACCTTGGCATATCTTTATATGCCACGGAAGGACTGGTGTTTTGATCATGTTATGTATGTGACCAGGCGCAATTTCAACATTGCTGTTGAAACTCTGTTGAAGCAGTTAGAGAATGTGATTGCATCGTTGGCGTCGGTAAAAGAGATCCTATCAGAGAAGCTGGGAGGTCTGGACTTGAAACTGGATCAGCTAATGGAGTTAACCCAGAAAACTTATCATTGCTTGGCTGATGTGAAGTCTAAGCTTTTTCGTATTGGAAACGAAGTTGAACATATACATAGACAAGTATCAGAGACGATCGAAAGGGTGAAGCGTATGGAGAGCAAACagGACATGACGAACGAAGGAATCGATTATCTTAAGGGATTCTGTGATGCTGGATATCACAAAAGTGAGCCACAGAAGTACAACCCATACAAGGGGCTGCGATTCATAGCTAAAAGCGGCGCCGCAGTTAAGAATTCCGTGATGAACAGAACAGCACTACTCAGATCTGGTATTTTGGTTCTCGGAACAGAAACATTAATCATGCCGAAGAATAAGGGAAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCTGATGATGAGAAGCGAGAACTCGTCTTTAAGGAAGACGGACAGGAATATGCCCAAGTGCTTCGCATGCTTGGTAATGGCCGATGTGAAGCCACGTGCATCGACGGGACTAAGCGGCTTTGTCATATCAGGGGAAAGATGCACAAGAAAGTCTGGATTGCAGCTGGGGACATCATACTTGTAGGTCTCCGGGATTATCAGGATGACAAGGCTGATGTCATTCTGAAGTACATGGCCGATGAAGCAAGGCTGCTTAAGGCATACGGTGAGCTTCCTGATAGTATACGTCTTAACGAGGGCATTGCTGGAGGATTGGAGGATGAGGAAGAAGGTGGTGGTGATGATTACATCGAATTCGAGGACGAAGATATTGATAAGATCTA 1412 0.4554 MLLQERSDEITSTGDTLSQSLGRTSNKYWETASQHDSNRRKNAAETLALWYRTTKGRRGRDWEEMAAEVAVKTLVIIIIGSGLQELLTRLNESEISPGEYDPARLADLFQQYASKTIELPLTKPGSNINRNSSSAGSYACCILPAVILATLAYLYMPRKDWCFDHVMYVTRRNFNIAVETLLKQLENVIASLASVKEILSEKLGGLDLKLDQLMELTQKTYHCLADVKSKLFRIGNEVEHIHRQVSETIERVKRMESKQDMTNEGIDYLKGFCDAGYHKSEPQKYNPYKGLRFIAKSGAAVKNSVMNRTALLRSGILVLGTETLIMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMADEARLLKAYGELPDSIRLNEGIAGGLEDEEEGGGDDYIEFEDEDIDKI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03122 470 Pfam Translation initiation factor 1A / IF-1 357 418 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bva12g03122 470 Coils Coil 182 202 - -
Bva12g03122 470 MobiDBLite consensus disorder prediction 445 470 - -
Bva12g03122 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 326 470 - -
Bva12g03122 470 TIGRFAM eIF-1A: translation initiation factor eIF-1A 339 435 IPR001253 GO:0003743|GO:0006413
Bva12g03122 470 SMART eIF1neu4 353 435 IPR001253 GO:0003743|GO:0006413
Bva12g03122 470 Gene3D - 327 470 IPR012340 -
Bva12g03122 470 Hamap Translation initiation factor 1A [eif1a]. 341 435 IPR001253 GO:0003743|GO:0006413
Bva12g03122 470 ProSiteProfiles S1 domain IF1 type profile. 347 421 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bva12g03122 470 MobiDBLite consensus disorder prediction 328 347 - -
Bva12g03122 470 MobiDBLite consensus disorder prediction 447 470 - -
Bva12g03122 470 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g03122 470 SUPERFAMILY Nucleic acid-binding proteins 327 469 IPR012340 -
Bva12g03122 470 Pfam Protein of unknown function (DUF1664) 136 259 IPR012458 -
Bva12g03122 470 PANTHER EIF-1A 326 470 IPR001253 GO:0003743|GO:0006413
Bva12g03122 470 ProSitePatterns Eukaryotic initiation factor 1A signature. 366 388 IPR018104 GO:0003743|GO:0006413
Bva12g03122 470 CDD S1_IF1A 358 434 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03122 Bva-Chr12 22348427 22354653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03122 326 470 Eukaryotic Initiation Factors Gene Family AT2G04520 88.276 3.96e-86 259