LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g03119	ATGAGGAAAAGGGAGAGGGAGAATCCTTGTGGGGTGTGTGGCCACTATCACAAGTATGAAGAAGGGGAAGTCTGTTCGATTTGCGGCCATCGGATTCCAGTCGCATCGGAGAAAACTTCAATTCAAGTTAGTGCCTTTCCGTCAGTGATTTTGCCGGAATTTCTTTACTTGGGCAGCTACGATAATGCATCACGCTCGGAGCTTCTCAAAACTCAGGGAATCTCTCGTATCCTTAATACGGTTCCTTCTTGTCAAAATCTCTACAAAAACTCGTTTACGTATCACTGCCTCTCGGATGACAAAGCTTTGCCATTTGATGATGCAATTGAGTTTCTAGAACAATGTGAAAGGGACAAGGCTCGTGTTCTGGTTCATTGCATGTCAGGAAAGAATAGGTCTCCGGCTATTGTGATTGCATATCTGATGAAGTCCAAGGGATGGAGATTAGCGCAGAGTTACCACTGGGTTAAAGAGCGGAGACCTTCCGTTGAAATAACCGAAGGTGTGTATCAGCAACTGCAGGAGTATGAGCACAAGCTCTTTGGATCTATTGAAGGCGGCAGCCCTCTGCCGTCCATGTTCCGGCCCACCGTGCCTCCTTCAATTAGCTTTGGCTTCCCAAAGATTAATGACTTAGCTGCTCCTCTTCCTGCCTTCGGCAATGCTGGAGCCGGAGCAGGAGCTCCATCGATTTTTGCACGATCAACCGTAGAAAACCTTCCGACGGAGTTTATATTTGGAGCTGGGCAGGCTCAGAAGAACGTCACAGGGGGGAACCCGTTTAATGCCAATCCAAGTAATCCAAACGGCAGTGATATTCAAATGGATGGTTCTTG	836	0.4749	MRKRERENPCGVCGHYHKYEEGEVCSICGHRIPVASEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLSDDKALPFDDAIEFLEQCERDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQSYHWVKERRPSVEITEGVYQQLQEYEHKLFGSIEGGSPLPSMFRPTVPPSISFGFPKINDLAAPLPAFGNAGAGAGAPSIFARSTVENLPTEFIFGAGQAQKNVTGGNPFNANPSNPNGSDIQMDGS	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g03119	278	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	278	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Bva12g03119	278	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	278	-	-
	Bva12g03119	278	Pfam	Dual specificity phosphatase, catalytic domain	55	178	IPR000340	GO:0008138\|GO:0016311
	Bva12g03119	278	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	47	181	IPR029021	-
	Bva12g03119	278	ProSitePatterns	Tyrosine specific protein phosphatases active site.	124	134	IPR016130	GO:0016311\|GO:0016791
	Bva12g03119	278	MobiDBLite	consensus disorder prediction	256	278	-	-
	Bva12g03119	278	CDD	DSP_plant_IBR5-like	47	176	-	-
	Bva12g03119	278	SMART	dsp_5	46	179	IPR020422	GO:0006470\|GO:0008138
	Bva12g03119	278	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	103	171	IPR000387	GO:0016311\|GO:0016791
	Bva12g03119	278	Gene3D	Protein tyrosine phosphatase superfamily	40	185	IPR029021	-
	Bva12g03119	278	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	46	182	IPR020422	GO:0006470\|GO:0008138

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g03119	Bva-Chr12	22332410	22338674	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g03119	1	166	Protein tyrosine phosphatase (PTP) family	AT2G04550	76.331	5.43e-99	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g03119	K04459		-	gmx:100806021	459.529