Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03107 ATGGAAAACTCAGACTGCGATGAACCCGAGAAGAAGAGGCCTCATTTGAGTTCGGTATCCTCTACCATGGCTCGTAACTCAACCAACCGACCAACAAACAACAATTGCGTTGATGCAGGAGTATTGCAATTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAGAAACGTGCATTGCATGATCTAGAAGAAAAGCTTAGAAACTTGAAAGACAGACAAAATTCTTATCATGATGccttaattgaaataaaccaGCTATGGAGTCAGTTGGCTGATGATCTGGTTCTTCTTGGCATACGAGCTGGGAGAGACCACAAAGCTTTGCAGACATTGGATTGCCTTTATAAGCCTCAAGGTTCACTGCCTTGGTGTCCTGAGGAGGATGTCATTCTTTGTAGATTAATACAGAAAGATTCTATTGAAGCACGCAGTAATGAGATTGCTAATTGTGTTGAGAAAGCCTTGACTATGCGTCAGTCATTTACACTGAACTTGTTGAAACTCCTTCAAGATTCCATTGATGCTCAGAGGGAAAGAACTGATGGTATTTCTCAGGTTTTGCATGGAAAATTATCTTCAGAAGATGCTATCATCCAAATGTCTAAGATTGACGATATGATGAAAGAGGAGACAAACAATTTACGTGAGGTAATTGATGCTCTCCAGATGAAGCAGAAAGAGTATACTGTTGGTATGCAAAATTATGTTAGCGGCCACTTACAGGATGAATCTGAAATTAAACGTCTTATAGGTGAGATTGATGAGAGCATGGCTGAACTTGAAGagagtagaagaaaattaGTCAATCTTAGAATGCAAAAGGATGCAGCAATGGGAATGCGTTACCCCAATTCAGATGCAGTGAATGGAAACTTGTCTCCTGAAAAACCTGCAGAGAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATACTTGCTGCTGACCGTCTTTTGGAGCTTGAAGATGCACGGGAAGACAATCTGACCTTGACAAAACAACTGCAAGATCTCCATaATGAACTGAATGATGACAAGTATGTACGCTCATCCAGAATATACTCTTTGGTAAATGATCAACTTCAACACTGGAATACTGAATTGGAGCGGTACAAAGCACTGACAGAGTCTCTGCAGgcTGAAAGGGTTCATGTCATGAAGTGGGAGAAGGAACTGAATTCAAAATTGGAGTCTGCAGACACTGCAAGGCATTCAGTTGACAATTCTGACTCTAGGATTGAAGAGTTAGAGCTTCAGTTACAGAAGTGTATTATTGAGAAGAATGATCTTGAAATTAAGATGGAAGAGACTATACAGGATTCAGGGAGAAAAGATATCAAATCTGAGTTTCATGTGATGGCCTCAGCTTTATCTAAGGAAATGGAGATGATGGAAGCTCAACTGAAGCGATGGAAGGATTCAGCTCATGAGGCCATTTCTTTACGTGAGAAAGCTCATTCATTAAGGACATTGTTAAGCGGAAAGATGAGTGAATTTAGGAGCTTATCAGACAAATGTGCTGAACAGTCGGTGGAGATAAAGTCTTTAAAAACATTGGTTGAGAAGTTGCAGAAGGAAAAACGGGAATTACAAATCTTTCTGGATATGCATGGGCAGGAGAGTTATGATAAAAGAGATTTGGCAGACATCAGAGAGTCAGAATGTAAAGCTTTATCTCAAGCTGAAGCACTGAAAAATGCTTTAGATGAACATAGTCTGGAGTTGAGAGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTGTGAACAAAGACTTTCTACTGCAGAAGCTGAAATAGAGGATTTAAGGACCAAGCTGGATGCCTCAGAAAGAGATATTTTGGAGCTGACTGAAGCTATTAAAGTTAAAGATGCTGAGGCAGATGCATATATATCTGAGATTGAGACTATTGGGCAAGCATATGAGGATATGCAGACGCAGAATCAACATCTGCTGCAGCAGGTTACTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGTGTAAAGACAAAACAGTCACACAGCACCTTACTATCCGAGAAACAGATTTTAGCAAAGCAACTTCAACAAATCAATGCTTCCATTGAAACTGTCAAAATGAGGATTACACACAGTGAAGAGCAGATGAAAGCTGTTCTGTCAGATGCGATTAAATCTACTATAGAGGAAAAACACCTTGCAGTCACCCTGGAATCTACGAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTGGCTCAAATCTGCAGTTACTTCTTCTGACAAAGAATATGATCAAATTCAGAAAGATGTGGAAGCTGTGCAAATAGAATTGGATGCTGAAAGGAATTCAAGAGAGAAGCTTGAGGAAGAACTCAGAGAATTGAATGAACAAATTGATGAGATGAGTTCTGAGACTGGAGAGGCAGCTATACAAAAACTCCAAGATGAGATTATAGTTTGCAAGAACATGATCAAGTGCACTGTTTGTTCTGATCGTCCAAAAGAGGTTGTTATTGTCAAGTGCTATCATCTGTTCTGCAATCGGTGCATTCAGAGAAATTTAGAACTCCGTCATCGCAAGTGTCCTGCCTGTGGAACAGCATTTGGTCAGAGTGATGTACGATTTgtgaaaatatg 2639 0.3975 MENSDCDEPEKKRPHLSSVSSTMARNSTNRPTNNNCVDAGVLQFQNQQLVQQIDIQKRALHDLEEKLRNLKDRQNSYHDALIEINQLWSQLADDLVLLGIRAGRDHKALQTLDCLYKPQGSLPWCPEEDVILCRLIQKDSIEARSNEIANCVEKALTMRQSFTLNLLKLLQDSIDAQRERTDGISQVLHGKLSSEDAIIQMSKIDDMMKEETNNLREVIDALQMKQKEYTVGMQNYVSGHLQDESEIKRLIGEIDESMAELEESRRKLVNLRMQKDAAMGMRYPNSDAVNGNLSPEKPAERTMGLRELKDSIEEAKILAADRLLELEDAREDNLTLTKQLQDLHNELNDDKYVRSSRIYSLVNDQLQHWNTELERYKALTESLQAERVHVMKWEKELNSKLESADTARHSVDNSDSRIEELELQLQKCIIEKNDLEIKMEETIQDSGRKDIKSEFHVMASALSKEMEMMEAQLKRWKDSAHEAISLREKAHSLRTLLSGKMSEFRSLSDKCAEQSVEIKSLKTLVEKLQKEKRELQIFLDMHGQESYDKRDLADIRESECKALSQAEALKNALDEHSLELRVKAANEAEAACEQRLSTAEAEIEDLRTKLDASERDILELTEAIKVKDAEADAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQSHSTLLSEKQILAKQLQQINASIETVKMRITHSEEQMKAVLSDAIKSTIEEKHLAVTLESTKWELADAEKELKWLKSAVTSSDKEYDQIQKDVEAVQIELDAERNSREKLEEELRELNEQIDEMSSETGEAAIQKLQDEIIVCKNMIKCTVCSDRPKEVVIVKCYHLFCNRCIQRNLELRHRKCPACGTAFGQSDVRFVKI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03107 879 Coils Coil 582 623 - -
Bva12g03107 879 Coils Coil 459 479 - -
Bva12g03107 879 SUPERFAMILY RING/U-box 826 870 - -
Bva12g03107 879 MobiDBLite consensus disorder prediction 16 32 - -
Bva12g03107 879 MobiDBLite consensus disorder prediction 1 15 - -
Bva12g03107 879 Coils Coil 404 445 - -
Bva12g03107 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 877 IPR013083 -
Bva12g03107 879 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 11 879 - -
Bva12g03107 879 Coils Coil 736 756 - -
Bva12g03107 879 Coils Coil 46 80 - -
Bva12g03107 879 Coils Coil 366 386 - -
Bva12g03107 879 PANTHER RING FINGER PROTEIN-RELATED 11 879 IPR013956 GO:0004842|GO:0010390
Bva12g03107 879 Coils Coil 326 346 - -
Bva12g03107 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Bva12g03107 879 Coils Coil 208 228 - -
Bva12g03107 879 Coils Coil 247 274 - -
Bva12g03107 879 SMART ring_2 827 865 IPR001841 -
Bva12g03107 879 Coils Coil 764 812 - -
Bva12g03107 879 CDD RING-HC_BRE1_like 825 866 - -
Bva12g03107 879 MobiDBLite consensus disorder prediction 1 32 - -
Bva12g03107 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Bva12g03107 879 Coils Coil 511 541 - -
Bva12g03107 879 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03107 Bva-Chr12 22246942 22259700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03107 827 874 RAD5 or RAD16-like Gene Family AT5G05130 35.417 8.26e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03107 K10696 - gmx:100796610 1264.6