Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03103 ATGCCAGAAAACCGGCAGGTTCAGAAGAATGCTGGTTCTAATCAATCCGGGGACAACATTGAAGATTCCATTTTGCGATTGAAAATCAATGATAATCGGGACAGAGATGCTGCTGCTCAATCAACCCCATTCCCTGATCGGCCTGGTGAACCTGATTGCTTATATTACTTGAGGACTGGGTCATGTGGTTATGGTAGTAACTGCCGTTATAATCATCCTGCGCATGTTTCACTTGGTGCTTTATATGGTGAAGATCTCCCTGAGAGGATTGGACAACCAGATTGCGGGTATTTTCTTAAGACGGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAGGGACAGGCGAGGTGCTAGTCCTGTATCCTTTAATGTTCTAGGCCTTCCCATGCGTCAGGAGGAAAAATCATGTCCATATTACATGCGAAATGGGGCTTGTAAGTTTGGAGTTGCATGCAAGTTTAATCATCCACAGCCTGCCTCTGTGGAAGCTGCCCCAGTGACTGGTTCTCCTGCCTCAGCAATTATTCCTTCATCTGGTTTACCATATGTAGGTGGGCTTCCTGCATGGTCATTGCCAAGAATGCCATATTTATCTGGACAGGGACTTCAATCATATGTGCCTGCTTTTCTGCCTACTTCACAAGGCTATGCACAGGGCTGGAATGGCTACATGGGAAATATGAACCCTGCAGTGTCTGCCAATTTTCTTGGGTCTAATCTTCTTTACCACTCCATGAATCTGGGAGAGCCGATTTCTGGTGGACaggttaatttattttcaacaatgCCAGCTCTCCCTGAGAGACCTGACCAACCCGAATGCCGATACTTTATGAGCACTGGGACCTGCAAATTTGGATCTGATTGCAAATTCCACCACCCAAAAGAGAGAGTAGCCCAATCAGTGATTAATCCACTTGGCCTTCCCATGAGACCTGGGCAAGCTATTTGTACTTCCTACAAAGTGTATGGCATATGCAAGTATGGTCCAACATGCAAATTTGATCATCCATTTATGGCAATCCCTCAGAACTATAGCTTGCATTTACCACCTATGCCTCTGCTTGGTGAATCTATCACATGTAATCCAAGAAGCTTGTCAAGGCCTTCTGAGACATCTCAATCCAAATCATCAAAATTACCTGACTGGGTTCCCAAATCAGATTCCTCAAGCGACAAGACTCAAAGCGCTGACACAAAAGCTACAGAAGATTCATCAAATCAAGCCGATGCCGCATCAAACACCGTTCCAGCCTCGTTGGAGTCTGTACAGGATTA 1289 0.4461 MPENRQVQKNAGSNQSGDNIEDSILRLKINDNRDRDAAAQSTPFPDRPGEPDCLYYLRTGSCGYGSNCRYNHPAHVSLGALYGEDLPERIGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGASPVSFNVLGLPMRQEEKSCPYYMRNGACKFGVACKFNHPQPASVEAAPVTGSPASAIIPSSGLPYVGGLPAWSLPRMPYLSGQGLQSYVPAFLPTSQGYAQGWNGYMGNMNPAVSANFLGSNLLYHSMNLGEPISGGQVNLFSTMPALPERPDQPECRYFMSTGTCKFGSDCKFHHPKERVAQSVINPLGLPMRPGQAICTSYKVYGICKYGPTCKFDHPFMAIPQNYSLHLPPMPLLGESITCNPRSLSRPSETSQSKSSKLPDWVPKSDSSSDKTQSADTKATEDSSNQADAASNTVPASLESVQD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03103 429 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Bva12g03103 429 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Bva12g03103 429 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Bva12g03103 429 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Bva12g03103 429 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Bva12g03103 429 Gene3D - 273 345 - -
Bva12g03103 429 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Bva12g03103 429 Gene3D - 21 85 - -
Bva12g03103 429 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Bva12g03103 429 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Bva12g03103 429 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Bva12g03103 429 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Bva12g03103 429 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Bva12g03103 429 MobiDBLite consensus disorder prediction 364 429 - -
Bva12g03103 429 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bva12g03103 429 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g03103 429 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Bva12g03103 429 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g03103 429 SUPERFAMILY CCCH zinc finger 313 341 IPR036855 GO:0046872
Bva12g03103 429 Gene3D - 88 174 - -
Bva12g03103 429 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 3 402 - -
Bva12g03103 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Bva12g03103 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 342 IPR000571 GO:0046872
Bva12g03103 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Bva12g03103 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Bva12g03103 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Bva12g03103 429 PANTHER PROTEIN PHOSPHATASE RELATED 3 402 - -
Bva12g03103 429 SUPERFAMILY CCCH zinc finger 275 301 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03103 Bva-Chr12 22197470 22201559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03103 1 415 C3H Transcription Factor Family AT1G04990 44.731 5.40e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g03103 zf-CCCH 8.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03103 - - vra:106765262 615.535