LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g03102	ATGCGACGAGGTAGAGCCGCAGCAGATCCGACAGCAGCCAAAGAAATCCATCAAGATTCCAAAATCCCAGTTAAGGAAATCAGATTCAGAGGCGTCAGAAAGCGTCCATGGGGTCGATTCGCCGCCGAGATCAGAGATCCATGGAAAAAGGCTCGGGTTTGGCTCGGTACCTTCGATTCGGCTGAGGATGCCGCTCGTGCATATGACGCTGCTGCTCGTTCCTTTCGTGGCCCCAAGGCTAAGACCAATTTCCCTTTGTCGAACCCTGAATCGGGTATGTCTCAGATTCCTCTGTATCAGCGAGATCTTGAAGATAACCATCATGGTTTTTCCAAGTTCGATCAGGTTCACGTTAATCGGCCAACCACTAGCAGCATGAGCAGCACCGTTGAATCATTCAGCGGACCTAGGGTTTCGAATCCGATTCCATCGGTCCCTCGGACCCACCGGAGACCCGTTAACCCGGTCCCGATCGAGGATTGTCACAGTGACTGcgattcttcttcttcggTGATCGATGATGAAGATTGCGTACTCACCTCTTCATTCCGCAAAATCCTACCTTTCGATCTGAACCGGCCGCCACCAATGGACTACGACGATCTCACCGCCGATGACTTCAAAGCCACTGCCTTGTGCCTCTG	644	0.5109	MRRGRAAADPTAAKEIHQDSKIPVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPLSNPESGMSQIPLYQRDLEDNHHGFSKFDQVHVNRPTTSSMSSTVESFSGPRVSNPIPSVPRTHRRPVNPVPIEDCHSDCDSSSSVIDDEDCVLTSSFRKILPFDLNRPPPMDYDDLTADDFKATALCL	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g03102	214	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3	19	190	-	-
	Bva12g03102	214	MobiDBLite	consensus disorder prediction	124	141	-	-
	Bva12g03102	214	Pfam	AP2 domain	28	77	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	MobiDBLite	consensus disorder prediction	124	155	-	-
	Bva12g03102	214	CDD	AP2	28	87	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	PRINTS	Ethylene responsive element binding protein signature	51	67	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	PRINTS	Ethylene responsive element binding protein signature	29	40	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	Gene3D	AP2/ERF domain	27	87	IPR036955	GO:0003700\|GO:0006355
	Bva12g03102	214	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	19	190	-	-
	Bva12g03102	214	SMART	rav1_2	28	91	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	ProSiteProfiles	AP2/ERF domain profile.	28	85	IPR001471	GO:0003700\|GO:0006355
	Bva12g03102	214	SUPERFAMILY	DNA-binding domain	29	87	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g03102	Bva-Chr12	22192524	22193956	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g03102	1	214	AP2-EREBP Transcription Factor Family	AT1G50640	52.155	9.04e-47	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bva12g03102		AP2	3.1e-13	CL0081