Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03078 ATGGAAATCAACAACACCATTCTGTGTGCTGTCACcattgccatttttctcttcaatttccaTATCCCAATCTCCCAAGCTCAACAAGAATACACAAACAACCAGTTATCAAATTGTGGAAATCCCACCAATGCCACGCTTGGCAATGCTTGTAACAGCGTCAATTCCTGCCTCTCCTACCTCACCTTCCGATCACGTTCCCCTTACAACACCACCGCCGCCATAGCCTCCCTCCTGAACTCCTCCACTGACGCCATGTCCGCCGCCAATGACTTCTCCGGTGGTGCCGATGAAGTCATCCCGGAGACCCCCAATTTAATCGTTCCCGTTAATTGCTCCTGTACCGGATCAGGCCTTTACTATCAACATAACTCCTCTTATGTTTTGAAGAGGAATGAAACGTATCTTTCAGTGTCTGGTTCCGCTTTCCAATGGCTCACCACTTGCCAAGCTCTCATGGCTCAGAACACTTATGGTGAGAGAGATCTTAGACCAGGGGACAACTTGCGTGTGCCTCTTAGGTGCGCTTGTCCCACTTCGAAGCAGACCCAAGCTGGGTTCAAGTATTTGATTACTTATATGATTTCTCAAGGGGaaacaatttcttcaattgCTCAGCAATTCGGGATCGATTATCGGAGTGTTTTGGATGCAAATATGCTTTCTGGAACCACCATCTTCTTCGACACCCCAATCATGGTACCCCTGAGACAAGAGCCTAACAGAACTCAACTTGTCACTGCGACGCCGCCACCTCCCCCGTCACCGGTCCCCAGTGGGGATGGGGATTCAGACTCTTCTACGAAATGGGTCATTGTTGGAATCGCGGTTGGAGCTGGTTTGGTTGTCATTTTGGGAATTTTCGTCTTTTTCTATTGCCTCCACCGCCGCCGCCAATCTCAGTCACCGGGGGCAAAGAAAGTCTCCGTTTCTGAAATTGATACGACCAACAAGAATCTGTTCGATTCCAGCACGAACGAGTCCTGGTCAGTCTCACTGAATGGTCTTCGCGATGCGGTTGATTCTTTAACAGTGTACAAATTCGAGGAATTGCAGAAAGCTACGAACTTTTTCAGCGAAAAGAACAGAATCAAGGGATCTATTTACAGGGCATCGTTTAAGGGAGACGATGCTGCTATTAAGGAGCTCAAAGGGGATGTCTCTGGTGAAATCAACATCCTCAAACGAATCAACCACACCAACATTATAAGACTCTCTGGTTTTTGTGTTCACAAAGGAAACACTTACCTCGTATACGAGTTTGCCGAAAATGGATCACTTGACGATTGGCTTCATTCCAATAAGCATGAGAATTCTACGACTCTGAATTGGAAGCGGAGGGTTCAGATTGCATATGATGTAGCAGATGCTTTGAATTACCTGCACAATTACACCAACCCAGTTCATATCCACAAGAACTTGAATAGTGGGAATGTGCTTTTGGACTCAAATTTCAGAGccaaagtttcaaactttggGCTAGCAAGAACAGTGGATGAAGAAGAAGGGGGGTTTCAATTGACTAGGCATGTAATTGGGACTCGGGGCTACATGGCACCTGAGTATACTGAACATGGGATTATTGCTCCAAAAATGGatgtttttgcttttgggGTTGTGATTTTGGAGCTTCTTTCAGGAAGAGAAGCCATTGTTGGGGAGCAGATGCTGGTTGCTTCTATCAGTGAGCCGCTTGAAGGGGACGATAAGAGAGATAAACTTGGAGCTTTCATGGACCCGATGTTGGGATCCGAATACCCATTGGATTTGGCAAACTCTTTGGCACAACTTGCGAAACGGTGCGTTTTGCAAGACCAGAATTCTCGTCCGACAGTGTCTGAGGTTTTGATGACTCTGTCAAAGATTCAATCCACTACGTTAGATTGGGATCCTTCTGAGGAAATTCAACGGTCCAGATCTGTCAGCCAGGTCCCAATGGCAGATAGATA 1949 0.4495 MSAANDFSGGADEVIPETPNLIVPVNCSCTGSGLYYQHNSSYVLKRNETYLSVSGSAFQWLTTCQALMAQNTYGERDLRPGDNLRVPLRCACPTSKQTQAGFKYLITYMISQGETISSIAQQFGIDYRSVLDANMLSGTTIFFDTPIMVPLRQEPNRTQLVTATPPPPPSPVPSGDGDSDSSTKWVIVGIAVGAGLVVILGIFVFFYCLHRRRQSQSPGAKKVSVSEIDTTNKNLFDSSTNESWSVSLNGLRDAVDSLTVYKFEELQKATNFFSEKNRIKGSIYRASFKGDDAAIKELKGDVSGEINILKRINHTNIIRLSGFCVHKGNTYLVYEFAENGSLDDWLHSNKHENSTTLNWKRRVQIAYDVADALNYLHNYTNPVHIHKNLNSGNVLLDSNFRAKVSNFGLARTVDEEEGGFQLTRHVIGTRGYMAPEYTEHGIIAPKMDVFAFGVVILELLSGREAIVGEQMLVASISEPLEGDDKRDKLGAFMDPMLGSEYPLDLANSLAQLAKRCVLQDQNSRPTVSEVLMTLSKIQSTTLDWDPSEEIQRSRSVSQVPMADR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03078 564 SUPERFAMILY LysM domain 106 150 IPR036779 -
Bva12g03078 564 ProSiteProfiles Protein kinase domain profile. 252 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03078 564 CDD LysM 106 134 IPR018392 -
Bva12g03078 564 Gene3D Phosphorylase Kinase; domain 1 235 336 - -
Bva12g03078 564 Gene3D Transferase(Phosphotransferase) domain 1 337 556 - -
Bva12g03078 564 Pfam LysM domain 108 150 IPR018392 -
Bva12g03078 564 SUPERFAMILY Protein kinase-like (PK-like) 256 539 IPR011009 -
Bva12g03078 564 PANTHER PROTEIN LYK5 3 554 - -
Bva12g03078 564 MobiDBLite consensus disorder prediction 159 178 - -
Bva12g03078 564 Pfam Protein tyrosine and serine/threonine kinase 299 533 IPR001245 GO:0004672|GO:0006468
Bva12g03078 564 Gene3D LysM domain 93 161 IPR036779 -
Bva12g03078 564 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 3 554 - -
Bva12g03078 564 SMART LysM_2 41 87 IPR018392 -
Bva12g03078 564 SMART LysM_2 107 150 IPR018392 -
Bva12g03078 564 ProSiteProfiles LysM domain profile. 106 149 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03078 Bva-Chr12 22005286 22007643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03078 15 556 Receptor kinase-like Gene Family AT2G33580 51.203 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Bva12g03078 PK_Tyr_Ser-Thr 1.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03078 - - gmx:100818534 657.907