Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03064 ATGAACAAGTGCGCGGCGTTTCTCCGTAGAACAATTTCAACCGAGTTCCACAATTCACCCTTTCAATGGCGATTCTATTGTTCTCCGCCCTCGGTCTCATCTCCTGCCTCTAGCAATAAACTCTTTGTTGGGGGGTTGTCATGGTCAGTGGACGAGAAGTCTCTGAAAGAAGCTTTCTCTTCGTTTGGGGATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGCGGTAGGTCTAGAGGCTTTGGATTTGTCATCTTTTCAAATGAAGACAATGCAAAATCTGCAAAAGATGCAATGGATGGGAAGGCACTATTAGGTAGACCATTGAGGATTAACTTTGCACTTGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCGGATATCGAACATTGGAGAATTCAACAGGCATAAAACTTG 422 0.4479 MNKCAAFLRRTISTEFHNSPFQWRFYCSPPSVSSPASSNKLFVGGLSWSVDEKSLKEAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDNAKSAKDAMDGKALLGRPLRINFALEKARGGPVVVPRISNIGEFNRHKT 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03064 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Bva12g03064 140 SMART rrm1_1 40 113 IPR000504 GO:0003723
Bva12g03064 140 Gene3D - 25 121 IPR012677 -
Bva12g03064 140 SUPERFAMILY RNA-binding domain, RBD 26 123 IPR035979 GO:0003676
Bva12g03064 140 PANTHER TRANSFORMER-2-RELATED 6 135 - -
Bva12g03064 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Bva12g03064 140 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 6 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03064 Bva-Chr12 21915386 21917535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03064 37 118 C2H2 Transcription Factor Family AT2G19380 36.585 2.94e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03064 - - gmx:100810104 211.075