Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03057 ATGGATTTTGAGCTGAGAAGAGCGAGAGAGAAGCTCGATAAAGAGCAGAAGGAGAGGAAGGAGAAGGCAAGGTTGAAAgtggagaaggaaaagaaagccaAAGCAGAGGCTAAGAAACAAAGGGAAGCCATTGAAGCTGCTCAGAGATCTCGCCGTATTGATGCAGCTGAAGCCCAACTCAAGGCTGATCAACAGATGCAGGAAAGCTTACTTGCTGGGAGAGGAATTATATTTTACCGTTTACTAGAAGCTGTACCTTATCAGGGTAATGGGGATAAGATAAAATTGCCACCTTCTTGCTTCAATGAATTGTCCGACCTAGGTGCTTTTGATAAGGGACCCTTGTACTTTCAGTTGTCATTAGTTCAAGAGAGTGGTTCTTCTGGCATGAGAGCTACtgataaagaaaatcaagGGACCACCCATTGTGGAGTTTTGGAATTCACTGCTGACGAAGGTTCAGTAGGTCTTCCACCTCATGTTTGGAATAATTTATTCAGTGAAAGCGCTCCAAAATCTCCCTTTATTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGAGTTATGCAAAACTTCAACCTGAAAGAGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAGCATGCCACTCTTTCTCAGGGTGATATTCTTACAGTCAATTATGGGGAACTTGCATACAAATTAAGGGTGCTTGAGTTGAAACCTTCTTCAAGTGTATCTGTCTTAGAAACAGATATAGAAGTTGACATAGTGGATTCTGATACTTCCTCAAAAGAGTCTGACCAGCATGTTTTAAGtccaattttatttggaaAGTCAGAGACTGGAATGGTAGAAGAAGGAAATTTCATGTATTACAAATTCTCAATAGACAATGAAACCTGGGAGAAAGTCAATTCTGGGAGTTCCAGTGTTGAGGTAAAATTAGAAGCAGAAACAGATGGGGGAGACACTGATCTTTTCATTTCAAGACATCCTCTTATATTTCCTACACGACACCAGCATGTGTGGTCTTCCCATGATGTTGGCTCAAAGGCTCTGGTTCTTAGCTCTAAAGATCAAAACTTGGGACCAGGGACTTACAGCATTGGTGTGTATGGCTTTAAGGGAACAACCAAGTACAAAGTATCGGTCAATATTCAGGACAACTTAAACCAAAAAGTGGGACAACAGGCATCATCTTCCAAGTCATCTATGGATGTTGATACCGAACAATGTAGAAATTGTAAGCATTATATACCAAGTAGGACTATTGCACTGCATGAAGCTTACTGCAGCAGACATAATGTTGTCTGCCAGCATGCTGGTTGTGGGGTTGTTCTTAGGATCGAGGAGTTCAAGAACCACATTCACTGTGGAAGGTGCGGTCAAGCATTCCAGCAGGGAGAATTGGAAAAGCACATGAAAGTTTTTCACGAGCCACTTCACTGCCCTTGTGGAATAGTCCTCGAGAAAGAACAAATGgTTGAACACCAAGCATCAGTCTGCCCCTTGCGACTAATCTCCTGCCGCTTTTGCGGCGATATGGTTCAAGCTGGAAGTGCTGCTACAGACTATAGGGACAAAATAAGAGGATTGTCGGAGCACGAGAGTGTTTGTGGGTCTAGGACTGCCCCATGTGATTCTTGTGGGCGTTCAGTGATGTTGAAAGACATGGACATACACTACATTGCAGTTCATCAGAAAAGTTG 1712 0.4159 MDFELRRAREKLDKEQKERKEKARLKVEKEKKAKAEAKKQREAIEAAQRSRRIDAAEAQLKADQQMQESLLAGRGIIFYRLLEAVPYQGNGDKIKLPPSCFNELSDLGAFDKGPLYFQLSLVQESGSSGMRATDKENQGTTHCGVLEFTADEGSVGLPPHVWNNLFSESAPKSPFIEVRYVWLPKGSYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVDSDTSSKESDQHVLSPILFGKSETGMVEEGNFMYYKFSIDNETWEKVNSGSSSVEVKLEAETDGGDTDLFISRHPLIFPTRHQHVWSSHDVGSKALVLSSKDQNLGPGTYSIGVYGFKGTTKYKVSVNIQDNLNQKVGQQASSSKSSMDVDTEQCRNCKHYIPSRTIALHEAYCSRHNVVCQHAGCGVVLRIEEFKNHIHCGRCGQAFQQGELEKHMKVFHEPLHCPCGIVLEKEQMVEHQASVCPLRLISCRFCGDMVQAGSAATDYRDKIRGLSEHESVCGSRTAPCDSCGRSVMLKDMDIHYIAVHQKS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03057 570 Gene3D - 185 258 - -
Bva12g03057 570 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 569 IPR004854 GO:0006511
Bva12g03057 570 Gene3D - 279 394 - -
Bva12g03057 570 SUPERFAMILY TRAF domain-like 413 459 - -
Bva12g03057 570 Coils Coil 5 50 - -
Bva12g03057 570 Pfam Ubiquitin fusion degradation protein UFD1 90 257 IPR004854 GO:0006511
Bva12g03057 570 Gene3D - 78 183 IPR042299 -
Bva12g03057 570 MobiDBLite consensus disorder prediction 1 44 - -
Bva12g03057 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 531 IPR013083 -
Bva12g03057 570 PANTHER UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN 1 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03057 Bva-Chr12 21840385 21843949 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g03057 UFD1 1.8e-48 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03057 - - gmx:100777384 950.658