Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03025 ATGGAACaagGTCTAACAGTTGGAGCTATTGCTGGAATCTGTGTTGGAATATTAGCTGGGCTTCTGGTAGTGGCAGTTAGTATATactacataaaatataagaagagAAACAATGAAGCCTCTGGTAATGCTGAACGTCAAACTTCAGGATCTGGTGGTCCTTCTAGTGCTGGTGATGCAGTCATCCCAGGCTTCACAGTGGACAAATCAGTTGAGTTCTCATATGAAGAACTAGCCAATGCCACAAATGACTTCAGTTCGGCTAACAAAATTGGTCAAGGAGGTTTTGGCGCTGTCTACTATGCAGAGTTGAGAGACGAGAGAGCCGCCATTAAGAAGATGGATATGCAAGCATCAAGAGAGTTTCTTGCTGAACTGCACGTCTTGACCCGGGTTCATCACCATAACCTGGtactaaaattttcaaactttaaagCATTAATAGTTCTTGCATAGGGTTTTAACAATAACTATGATCTCATCTGCAGATATGCTCAATATGGCAGAGTTTCTCCCAAGATAGATGTCTATGCTTTTGGAGTTGTTCTGTATGAACTGATTTCTGCTAAAGAAGCTATTTTGAAGATAAATGAATCTTTTGCTGACGCTAAGGGCCTTATAACTTTGGTACTTCTTTCTCTACTTGAGAAATTTATGTCACTATCATCATCTGAATCTAAATTAAAGGGACATATTCATCTTTCCCCTTATGTGTGCCAGTTTGACGAAGTTCTTAATAAGGATAACCCTAAAGAAGATCTTCGCAAACTAGTGGATCCAAGGCTTGGCGATAATTATCCTATTGACTCAGCGTATAAGATGGCGCAACTGGCAAAAGCATGTACACAAGAAAATCCACAACAGCGCCCCAGTATGAAATATATTGTGGTTGCTCTTATGATGACACTTTCTTCTAATACTGGAGATTCGGATGTTGGCTCCctctatgaaaataaagttcTTATGAATCTTATGTCAGGAAGATA 986 0.3793 MEQGLTVGAIAGICVGILAGLLVVAVSIYYIKYKKRNNEASGNAERQTSGSGGPSSAGDAVIPGFTVDKSVEFSYEELANATNDFSSANKIGQGGFGAVYYAELRDERAAIKKMDMQASREFLAELHVLTRVHHHNLVLKFSNFKALIVLAGFNNNYDLICRYAQYGRVSPKIDVYAFGVVLYELISAKEAILKINESFADAKGLITLVLLSLLEKFMSLSSSESKLKGHIHLSPYVCQFDEVLNKDNPKEDLRKLVDPRLGDNYPIDSAYKMAQLAKACTQENPQQRPSMKYIVVALMMTLSSNTGDSDVGSLYENKVLMNLMSGR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03025 327 Gene3D Phosphorylase Kinase; domain 1 70 150 - -
Bva12g03025 327 Pfam Protein tyrosine and serine/threonine kinase 88 139 IPR001245 GO:0004672|GO:0006468
Bva12g03025 327 Gene3D Transferase(Phosphotransferase) domain 1 160 313 - -
Bva12g03025 327 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 162 327 - -
Bva12g03025 327 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 162 327 IPR044812 GO:0019199|GO:0045087
Bva12g03025 327 ProSitePatterns Protein kinases ATP-binding region signature. 91 113 IPR017441 GO:0005524
Bva12g03025 327 CDD TM_EGFR-like 7 39 - -
Bva12g03025 327 ProSiteProfiles Protein kinase domain profile. 85 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03025 327 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 4 138 - -
Bva12g03025 327 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 138 IPR044812 GO:0019199|GO:0045087
Bva12g03025 327 SUPERFAMILY Protein kinase-like (PK-like) 68 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03025 Bva-Chr12 21596571 21600787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03025 166 327 Receptor kinase-like Gene Family AT3G21630 49.383 1.86e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Bva12g03025 PK_Tyr_Ser-Thr 3.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03025 - K13429 lsv:111921131 256.914