Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03005 ATGCAGACTATCTGTTTGATGTTATTCTTGTTAGTGGTGGTTGCATTGGGGAATTCAGATATTGATGCTCTCCTTGAACTCAAGAAGAGCATCGAAAAAGACCCATCCGGACTAGTTTTTACTTCTTGGGATTCCAAGTCTCTAGCTTCTGATGGATGTCCACAGAATTGGTATGGGATATTGTGTAGTGAAGGCAATGTTGTATCAATCACTCTGGATAACGTTGGTTTGGTTGGACAATTCAATTTCCAAGCTATTAATAGCCTTACAATGCTGCGCAACTTGTCAATTTTGAACAACGTTTTCACAGGAAGTATCTCACACATTGGTCCAATGGAGTCACTAGAATTTCTTGATCTATCAGTCAACAAGTTCAATGGGTTGGTACTCTCTGATTTGGTTAATCTGCATAATATAGTATATCTGAATGTTTCTTCAAATGAATTTGAAGGCACTTTTCCTGTTAACTTTGGCAAACTTGAGCACTTGAAGTATTTAGACTTGCATGCTAATAGCTTCTCTGGGGATATTATGCGTGTCTTTTCTCAGATGGGCAGTGTGGTACATGTTGACCTAAGCAGAAACAGGTTCTCTGGTTCACTGGATTTGGGGCTTGCCAAAAATTCCTTCCTCTcgtcaattaaatatttgaatattagcCACAATTCCTTGACTGGTAAGCTATTTGCTCATGATGGAATGCCATACCTTGACAGTTTAGCAATCTTTGATGCTAGCAATAATCAGTTGGAAGGAACTATACCTTCTTTCAATCTTGTGGTATCTCTCCGGGTTCTTCGACTTGGATGCAACCAGCTATCAGGTTCCCTGCCACAAGCTTTGTTGCAGGATACTTCAATGATGTTGTCTGAACTGGATCTTAGTCAGAACAACCTTGAAGGTCCCATTGCAAGTATAATCTCTGTAACTCTAAAGAAGCTTAACGTATCTTCAAACAAGCTGTCTGGGCCCTTGCCTCTCAAGGTAGCCCACTGTGCTCTCATAGATTTAAGTAATAACATGCTGTCAGGTAACTTGTCAAGGATCCAGTACTGGGGTAATTATGTGGAAGTTATTCAGCTGAGTTCAAACTTGTTGACTGGAATGCTGCCAAACAGAACTTCTGAATTTTTAAGGTTATCTGTACTTAAGACATCCAACAACTCATTAGAGGGAGTTCTACCACCAGTATTAGGAACATACCCAGAACTGAAAGAGATTGATCTCAGTGCCAACATGCTTTCTGGTTTCCTCCTTCCAAGTCTTTTCACCTCGACCAAATTGACTGATATTAATCTCTCAGGCAACAAGCTTTCTGGATCATTACCCATTCAACAAATTCCAAATGGTCAGTTAGTTTCTGCTGAAAATTCTAGTCTGGTGTCTCTTGATCTATCATTTAACAACTTGAGTGGGCATATTCCTTCGGAAATAAGTGAGCTTCGAAATTTGGTATATCTCAATCTATGTAACAACAAATTTGAAGGTACTATTCCCGTTGACCTTCCAGACAAATTGAGAGGATTCAACGTGTCCTTCAATAATCTCTCTGGTACTGTTCCTGATATCTTAAAGAGCTTTCCTGAATCAGCATTTCATCCAGGAAATTCTTTGCTCACATTTCCATATTCACCACCATCTCCAAAAGATAATGCTGATATCAGTTTGAATAAAGATAGGTCACAAACGAAATCTGTAATAAGGATTTTTGTGATTTCAATTTTGGTTTGTATTGCTTTCTTGATGGCCATTGTTGGTATAGTAAGTTATTTCAAGAATCAATGTCTAAAAGAAAGGACTATTGGACAAAATGGAGCAAAAGGTATTGGCCAAGGGAGTTCTTCTATGTCCAATATTGATGCACCTAACAGAAATGAGGAAGCATTGTCTTCATCAAGTTTTGATCCAAATTGTTTACCTTCATGCCGGGTGAGGGCTGCTGATGATGCCAGAAATATCTTTGCAATGgtaaagaagcaaaaagatCTTGACCATGCTGAGTTAGTTAAGAACGAAGAAGGAATGCCTTTTCCAATGTCTTTCTTATCGGCTTCAAATCCTTCATCTTCTAGAAGTTATCCATTTGAGAATACTAGTGCCCTCAAAGTATGCTCTCCGGATGCGTTGGCAGGGGATTTGCATCTGTTTGATGGCTCCTTGGTGCTCACGGCGGAGGAACTTTCATGTGCTCCAGCTGAAGTTATTGGTAGGAGTTGTCATGGCACACTGTACAAAGCTACCCTTAACTCTGGTCATATTTTGGCTATCAAATGGTTAAAGGATGGGATGGCTAAAGGTAAGAAGGAGTTTGCAAGGGAAGTAAAGAAACTTGGGACTATAAGGCATCCAAATCTGGTTTCTCTTCAGGGTTACTACTGGGGCCCAAAGGAGCATGAAAAACTGGTTATATCAAATTATGTCAATGCCTTATCTTTGGACATTTTTCTTCATGAGGCAGGTAAAGGACATATCCATCCGCTATCTCTTGATGAAAGGCTGAAGGTAGCCAGAGATGTGGCGCGATGTCTACATTACCTACATAATGAGAAAGCCATACCACATGGCAATCTGAAATCCACCAACATTCTCCTAGAAACTCCGAACCGAAATGTACTGCTCACTGATTACAGCCTACATAGATTATTAACTGCTGCTGGTACTGCTGAGCAAGTTCTAAATGCAGGTGCTCTTGGTTATCTGCCTCCTGAATTTTCTAGCTCAAGCAAACCAAGCCCATCACTGAAGAGTGATGTCTTTGCATTTGGTGCTATCTTGTTAGAGCTCCTAACAGGGAGAAATTCTGGGGAAATTGCTTCTGGGATTCCTGGAGTGGTTGAGCTGACAGACTGGGTCAGGTTTTTGGCAGAAAAAAATCGGTCCAGCGAGTGCTTTGACAGGCTACTTTTGCTGGACAAGCACAGTGGGGAGCGCCTGGCTAGAGTTCTTGATGATATGCTCAAGGTGGCTCTTAGATGCATCCTTCCAGCATCAGAGAGGCCTGACATGATAACTGTTTTTGAAGATCTTTCAGTAATAAGGTA 3041 0.4032 MQTICLMLFLLVVVALGNSDIDALLELKKSIEKDPSGLVFTSWDSKSLASDGCPQNWYGILCSEGNVVSITLDNVGLVGQFNFQAINSLTMLRNLSILNNVFTGSISHIGPMESLEFLDLSVNKFNGLVLSDLVNLHNIVYLNVSSNEFEGTFPVNFGKLEHLKYLDLHANSFSGDIMRVFSQMGSVVHVDLSRNRFSGSLDLGLAKNSFLSSIKYLNISHNSLTGKLFAHDGMPYLDSLAIFDASNNQLEGTIPSFNLVVSLRVLRLGCNQLSGSLPQALLQDTSMMLSELDLSQNNLEGPIASIISVTLKKLNVSSNKLSGPLPLKVAHCALIDLSNNMLSGNLSRIQYWGNYVEVIQLSSNLLTGMLPNRTSEFLRLSVLKTSNNSLEGVLPPVLGTYPELKEIDLSANMLSGFLLPSLFTSTKLTDINLSGNKLSGSLPIQQIPNGQLVSAENSSLVSLDLSFNNLSGHIPSEISELRNLVYLNLCNNKFEGTIPVDLPDKLRGFNVSFNNLSGTVPDILKSFPESAFHPGNSLLTFPYSPPSPKDNADISLNKDRSQTKSVIRIFVISILVCIAFLMAIVGIVSYFKNQCLKERTIGQNGAKGIGQGSSSMSNIDAPNRNEEALSSSSFDPNCLPSCRVRAADDARNIFAMVKKQKDLDHAELVKNEEGMPFPMSFLSASNPSSSRSYPFENTSALKVCSPDALAGDLHLFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLNSGHILAIKWLKDGMAKGKKEFAREVKKLGTIRHPNLVSLQGYYWGPKEHEKLVISNYVNALSLDIFLHEAGKGHIHPLSLDERLKVARDVARCLHYLHNEKAIPHGNLKSTNILLETPNRNVLLTDYSLHRLLTAAGTAEQVLNAGALGYLPPEFSSSSKPSPSLKSDVFAFGAILLELLTGRNSGEIASGIPGVVELTDWVRFLAEKNRSSECFDRLLLLDKHSGERLARVLDDMLKVALRCILPASERPDMITVFEDLSVIR 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03005 1013 PANTHER OS07G0626500 PROTEIN 1 1012 - -
Bva12g03005 1013 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Bva12g03005 1013 Pfam Leucine Rich repeat 457 471 IPR001611 GO:0005515
Bva12g03005 1013 Gene3D Ribonuclease Inhibitor 137 205 IPR032675 -
Bva12g03005 1013 Gene3D Ribonuclease Inhibitor 19 136 IPR032675 -
Bva12g03005 1013 SUPERFAMILY Protein kinase-like (PK-like) 732 1009 IPR011009 -
Bva12g03005 1013 Pfam Protein tyrosine and serine/threonine kinase 733 933 IPR001245 GO:0004672|GO:0006468
Bva12g03005 1013 ProSiteProfiles Protein kinase domain profile. 729 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g03005 1013 Gene3D Ribonuclease Inhibitor 206 550 IPR032675 -
Bva12g03005 1013 SUPERFAMILY L domain-like 357 527 - -
Bva12g03005 1013 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Bva12g03005 1013 SUPERFAMILY L domain-like 45 344 - -
Bva12g03005 1013 Gene3D Transferase(Phosphotransferase) domain 1 809 1013 - -
Bva12g03005 1013 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 1012 - -
Bva12g03005 1013 MobiDBLite consensus disorder prediction 603 632 - -
Bva12g03005 1013 Gene3D Phosphorylase Kinase; domain 1 728 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03005 Bva-Chr12 21478603 21482397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03005 237 548 Receptor kinase-like Gene Family AT3G51740 33.815 4.31e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Bva12g03005 PK_Tyr_Ser-Thr 9.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03005 - - ccaj:109792420 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g03005 12 21478603 21482397 Bva12g03005 12 21478603 21482397 ECH