Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03003 ATGGAGGAAGGAAAACATAAATCTAGGAAGGAAGATTCTGAGAGGAAGGAGGATGATTCCAAGAGGAGTCACCTTGATCGTGATAGAAGAGGAGATAGAGAAGAGAGGCACCGGGAGAAGGATAGGGAGAAGAGGGACAGGGAGAGCCGGCGGCATGAGAGGGAGAAGAGTAGTGATTCTGAAGATAGGCATGGTAGGGAGAAGGAGAAGCGTAGAGATAGGAAAAGGGACAAGGAAGacagggagagggagaaagagaaagaaaggagagaCAGGGCaagggagaaagaaagagagagggagagggaaagagaaaggagagaagagagggagagggagagggagagagatagGAGGGaaagggagagggagagagatagagagagagagagggagagggagagggagagggaaagggaaagagaaagagaaagggagaggAGAGTGCGTGAGAGGGAGAAACATAGGGAAGTTGATAGTGATTATAGTGACGATGATTTGAGGGAGAGGGATAGGAAGCGACATAGGAAAGAGGACGATGATTACAAGAGGAGAGAGCGGGAAAGGAGCACTAGTAAGTCAAACAGGCACAGTGATGATATTGAAGATAGCCCAAGGAAGAAGAGTGGTGAAGATGAGTCAGATActagagagaaaaaacaaacccGTGAAGAGGAGATGGAGGATGAAAACAGGAGGTTGGATGAAGAGATGGAaaagaggaggaggagagTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAGGGAAGAAGCTGAGAGAGAAAAGCGGGGTGAGGAGAGTGCTGAGGAACCCAAGTCTGGAAGAGTGTGGACGCTAGAGGGCGAatctgatgatgaagaaggtGTCACTACAGGGAAGCCAGATTCTGCGATGGATATAGATGGTAATGTAAAGCCTCCTGAAAACGATTCAGGGGACTTCATGGTGGTTGATGTTGGTAATGGAACAGTTCAATCAGATTTACAGGATGGAGCTGCTGATGCTCCTGATGGTGAGGAAATTGACTCATTGGATGCTTTCATGAATTCAATACTGCCTGAAGTTGAAATGCTGAATAATGCTGTGGCTTCTTCAACTGCTGATGTAAGTACTGACCTGATGACCAAGGATAAAGGGGACGAGCATACTAACGGTGAACAGATGAAGAAAGgatcaaataaatcaattgGGAGAATAATTCCTGGTGAAGACTCTGAATCGGATTATGCAGATATGGAAAATGAGGGGGATCCAttggaagatgaagatgatgatgagttCATGAAAAGAGTGAAGAAGACAAAAGCTGATAAACTTTCTATAGTTGACCATTCAAAGATTGATTATGCACCATTTAggaaaaacttttatatagaGGTGAAAGAAATCTCGAAGATGACCCCTGGAGAAGTTGCAGAATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAATCATGGCACCAGACTGGACTTACTAGCAAAATCTTGGAGACAATAAAGAAGCTTAACTATGAAAAACCAATGCCTATCCAAGCTCAATCATTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCAAAAACTGGTTCAGGCAAAACACTGGCCTTCGTTCTCCCAATGTTGAGGCACATCAAGGATCAGCCTCCTGTTGTTGCTGGAGATGGACCGATTGGGCTTATAATGGCTCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAGGAAGTTTTCAAAGTCGTTGGGTCTAAGGTGTGTGCCTGTCTATGGAGGCTCTGGTGTTGCCCAGCAAATTAGTGAGTTGAAACGTGGTACTGAGATTGTGGTTTGTACTCCTGGTAGAATGATTGACATACTTTGTACCAGTGGTGGAAAAATAACTAACCTGCGCAGAGTTACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACGCGAATTGTTCAGAACATTCGGCCAGATCGACAAACTGTTCTCTTCTCTGCAACTTTCCCTCGTCAGGTTGAAATTCTGGCTCGCAAAGTTTTGAATAAACCAGTTGAAATACAGGTTGGTGGGAGGAGTGTTGTGAACAAGGACATAACACAGCTAGTGGAGGTAAGGCCAGAAGGTGAGAGGTTCTGGAGGCTCTTAGAAATATTAGGTGAATGGCACGAGAAAGGAAAGATTTTGATGTTTGTTCACTCTCAGGTTAAATGTGATACTTTGTTGAAGGATTTGTTTGCCCATGGCTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGTCAGATCGTGAATCCACACTTGCTGATTTCAAAAACAATGTATGCAATTTGTTGATCGCAACTAGTGTTGCTGCAAGGGGATTAGATGTCAAAGAGCTTGATCTGGTGATAAATTTTGATGTTCCGAACCATTATGAAGATTATGTACATCGTGTTGGGCGTACCGGTCGAGCTGGCCGGAAGGGTTATGCTATCACATTTATTTCTGAGGAAGAGGCAAAATATGCACCTGATATGTTGAAAGCTTTGGAGTTGTCTGAGCAAGTTGTTCCCGATGACCTGAAAGCTCTTGCTGATGGCTTCATGGCAAAAGTGAATCAAGGACTTGAGCAAGCCCATGGGAGTGGTTTTGGAGGAAGTGGCTACAAGTTTAATGAAGAGGAAGACGAAGTGAGGAGAGCAGAAAAGAAAGCACAAGCCAAGGAATATGGATATGAAGTGCATTCAGATTCTGAAGATGAAGACGAAGGTATTAGAAAGTCATCAGCTGACATCTCACATCAGGCTGCTATCGCTCGAGTTCTTGCTAGTGCCTCCATAACAAATCCATTAGCAACACCAACTCCCTTCTCTGCTACACTTCCTACGCCATCTCTTATTAATCTCCCATTACCAGGGCCTGCAACTGCCATTCCTGTAACAACACTTTCCCATGTTCCCAATGAGGCAGCAGCTGCTCGGGCAGCTTTAGCTGCCATAAACCTGCAGCACAACTTAGCCAAGATACAAGCTGATGCATTGCCCGAGCATTATGAAGCAGAGTTGGAGATAAATGATTTCCCCCAGAATGCTAGGTGGAAAGTCACGCACAAAGAGACTTTGGGCCCAATTTCTGATTATACTGGAGCTGCTATCACCACTAGGGGACAGTTTTTCCCACCAGGTAAGATCCCAGGACCTGGAGAGCGCAAACTTTACCTGTTCATTGAGGGGCCCAGTGAACAATCTGTTAAGAGAGCTAAAGCCGAGTTGAAGCGTGTCTTGGAAGATATCACTAATCAGGCTTTGCAGATTCCTGGCGGAGCTCAACCAGGCAAATATTCTGTTTTATG 3377 0.4095 MEEGKHKSRKEDSERKEDDSKRSHLDRDRRGDREERHREKDREKRDRESRRHEREKSSDSEDRHGREKEKRRDRKRDKEDREREKEKERRDRAREKERERERERERREERERERERDRRERERERDRERERERERERERERERERERRVREREKHREVDSDYSDDDLRERDRKRHRKEDDDYKRRERERSTSKSNRHSDDIEDSPRKKSGEDESDTREKKQTREEEMEDENRRLDEEMEKRRRRVQEWQELRRKREEAEREKRGEESAEEPKSGRVWTLEGESDDEEGVTTGKPDSAMDIDGNVKPPENDSGDFMVVDVGNGTVQSDLQDGAADAPDGEEIDSLDAFMNSILPEVEMLNNAVASSTADVSTDLMTKDKGDEHTNGEQMKKGSNKSIGRIIPGEDSESDYADMENEGDPLEDEDDDEFMKRVKKTKADKLSIVDHSKIDYAPFRKNFYIEVKEISKMTPGEVAEYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKLNYEKPMPIQAQSLPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIRKFSKSLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPEGERFWRLLEILGEWHEKGKILMFVHSQVKCDTLLKDLFAHGYPCLSLHGAKDQSDRESTLADFKNNVCNLLIATSVAARGLDVKELDLVINFDVPNHYEDYVHRVGRTGRAGRKGYAITFISEEEAKYAPDMLKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGSGFGGSGYKFNEEEDEVRRAEKKAQAKEYGYEVHSDSEDEDEGIRKSSADISHQAAIARVLASASITNPLATPTPFSATLPTPSLINLPLPGPATAIPVTTLSHVPNEAAAARAALAAINLQHNLAKIQADALPEHYEAELEINDFPQNARWKVTHKETLGPISDYTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQIPGGAQPGKYSVL 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03003 1125 Coils Coil 76 147 - -
Bva12g03003 1125 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
Bva12g03003 1125 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 647 655 IPR000629 -
Bva12g03003 1125 MobiDBLite consensus disorder prediction 1 318 - -
Bva12g03003 1125 Gene3D - 702 876 IPR027417 -
Bva12g03003 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 873 IPR027417 -
Bva12g03003 1125 CDD SF2_C_DEAD 713 843 - -
Bva12g03003 1125 SMART helicmild6 753 834 IPR001650 -
Bva12g03003 1125 SMART ultradead3 511 716 IPR014001 -
Bva12g03003 1125 Pfam Helicase conserved C-terminal domain 728 834 IPR001650 -
Bva12g03003 1125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 712 873 IPR001650 -
Bva12g03003 1125 Coils Coil 217 268 - -
Bva12g03003 1125 Pfam DEAD/DEAH box helicase 517 688 IPR011545 GO:0003676|GO:0005524
Bva12g03003 1125 Gene3D - 444 701 IPR027417 -
Bva12g03003 1125 MobiDBLite consensus disorder prediction 375 425 - -
Bva12g03003 1125 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 154 947 - -
Bva12g03003 1125 MobiDBLite consensus disorder prediction 1 292 - -
Bva12g03003 1125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 701 IPR014001 -
Bva12g03003 1125 CDD DEADc_DDX46 481 702 - -
Bva12g03003 1125 MobiDBLite consensus disorder prediction 406 424 - -
Bva12g03003 1125 Coils Coil 1089 1112 - -
Bva12g03003 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 851 IPR027417 -
Bva12g03003 1125 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 154 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03003 Bva-Chr12 21452068 21455445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03003 479 854 Eukaryotic Initiation Factors Gene Family AT3G19760 31.565 3.47e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03003 K12811 - gmx:100784306 1465.29