Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03000 ATGGCACGTGGAGGTAGTTCATCTAGCTCGAACCCAAAAATTTCTGCATTAATTGTGGAGGATCATAGGCCCACCTCTATGCTCCATGAAGCGATACTTAAACGCAATAATATGGAGACCAAAGTAGTTAATAATGGAAAGCATGCAGTGGAATTGCATAGTAAAGGGGAGCGCTTTGATGTCATTTTCATGGACTACAATATGCCTGAGATGAATGGCGCTCagGCAACGAAAAAACTGCGTGAAATGGGCGTGAGGAGCATGATCGTGGGAGTCACCTCATGTACTGACTTTGAAAGGGTTGAGTTTATGGCTGCTGGTTTGGACAAATGCTTTAAGAAGGGATTAACCAGAGCAATGGTTGAAGAAGTTCTGCAAAAGCTCAAGGAATA 392 0.4311 MARGGSSSSSNPKISALIVEDHRPTSMLHEAILKRNNMETKVVNNGKHAVELHSKGERFDVIFMDYNMPEMNGAQATKKLREMGVRSMIVGVTSCTDFERVEFMAAGLDKCFKKGLTRAMVEEVLQKLKE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03000 130 CDD REC_hyHK_CKI1_RcsC-like 17 125 - -
Bva12g03000 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 4 129 - -
Bva12g03000 130 SMART REC_2 14 125 IPR001789 GO:0000160
Bva12g03000 130 Pfam Response regulator receiver domain 17 121 IPR001789 GO:0000160
Bva12g03000 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 129 - -
Bva12g03000 130 ProSiteProfiles Response regulatory domain profile. 15 129 IPR001789 GO:0000160
Bva12g03000 130 SUPERFAMILY CheY-like 14 128 IPR011006 -
Bva12g03000 130 Gene3D - 3 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03000 Bva-Chr12 21441598 21442453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03000 14 128 Response Regulator Gene Family AT3G04280 48.305 3.94e-27 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g03000 Response_reg 1.6e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03000 - - egr:104416322 114.005