Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02996 ATGCCTCATAATGGAGAGCAGGATGCCTTGCCTCCACCGCCTCCTGTTGTCCCGCCACATGTTGTCCCAGTGAAGGCTGAATCAGAGTTACCTCCTGGACCTGTTAAGAAAAAGGCTTCCCGGGTTCCAATGGCTAGACGTGGCTTGGCATCCAGAGGAAATAAACTATCTCTTCTTACCAACCACTTTAAAGTCAGTGTTTCTAAGATTGATGGGCATTTCTTCCATTACAGTGTGTCTCTTTCTTATGAAGATGGACGACCTGTAGAAGGTAAAGGAGTAGGGAGAAAAGTAATTGACAAGGTGCAGGAGACTTACGATTCTGAGCTAAATGGAAAACCATTTGCTTATGATGGTGAAAAGAGTTTGTTTACTATTGGTCCTCTTCCTCGAAACAAGCTTGAATTTACTGTTCTTCTGGAGGAAATGACTTCAAACAGAAATAATGGCAATTGCAGCCCTGATGGGTATGGAAGTCCTAACGAGACTGACAGAAAGAGGATGCGGCGGCCATATCGGTCCAAATCATATAAAGTTGAGATTACCTTTGCTGCAAAAATTCCAATGCAGGCCATTGCCAGTGCTCTACGTGGTCACGAATCTGAGAATTTCCAAGAAGCTGTCAGAGTGCTTGATATTATACTCCGGCAACATGCTGCTAAGCAAGGTTGCTTGCTGGTTCGGCAATCCTATTTCCACAATGATCCAAGGAATTTTGCTGATGTTGGAGGTGGGGTTCTTGGTTGCAGAGGATTTCATTCAAGTTTTAGAACTACGCAGGGTGGCTTCTCCCTTAATATTGATGTGTCAACTACCATGATAATACAGCCTGGGCCTGTGGTGGACTTCTTAATTGCCAACCAAAATGCTAGAGATCCATTCTCTCTTGACTGGACAAAGGCCAAACGGATGCTTAAAAATCTGAGGATTATGGCAAGCCCATCCAATCAAGAATACAAGATAACTGGCCTTTCTGACAGACCATGCCGAGAGCAGACGTTTACTCTGAAGAACAAAGGTGGGGGAGAGGATGATGCTGTAGAAGTAACTGTTTATGATTACTTTGTTAATCATCGAAATATAGATCTCCGTTATTCTGCTGATTTGCCTTGTATTAATGTTGGGAAACCAAAGCGTCCAACTTATCTCCCCGTTGAGCTTTGCTCTTTGGTGTCCTTGCAGAGGTATACCAAAGCACTATCCACACTTCAAAGGGCTTCACTAGTGGAAAAATCCAGACAGAAGCCACAAGAAAGGATGAAAGTTTTGACTGATGCTCTAAAGGTAAACAACTACGATGCTATACCGATGCTTCGAAATTGTGGAATATCAATCAGCTCTGGCTTTACTCAAGTAGATGGTCGGGTTTTGCAAGCCCCAAAGttGAAGGTTGGCAATGGGGAGGATTTATTTCCTAGGAATGGAAGGTGGAATTTCAATAACAAGAAATTAGCGCAGCCAACAAAGCTAGAACGATGGGCTGTGGTGAATTTCTCAGCACGCTGTAATGTACAACAGCTTGTGCGAGATCTGATGAAAGTTGGAGATATGAAAGGACTTCCCATAGAGCAGCCATTCGATGTGTTTGAAGAAAATCCTCAGTTTAGGCGGGCTCCTCCTTTGGTTCGTGTGGAGAAGATGTTCGAAGAAATCCAGTCTAAGCTTCCCGGGGCAcctcaatttcttctttgtctGCTTCCTGAACGGAAGAATTGTGATCTTTATGGACcatggaaaaagaagaatcttgCTGAGTTTGGAATTGTCACTCAATGCTTGGCTCCTACGAGGATCAATGACCAATATCTTACCAATCTTCTGCTGAAAATCAATGCTAAACTTGGGGGTTTGAATTCATTGTTGTCTGTTGAAACTCCTCCATCCATACCTTTGGTGTCCAAAACTCCAACCATCATTCTTGGCATGGATGTATCGCATGGTTCTCCTGGGCAGTCTGATATTCCGTCAATAGCTGCGGTGGTGAGCTCCAGACAATGGCCTCTGATATCTAAATACAGGGCTTGTGTTCGTACTCAATCTCCAAAGGTTGAAATGATTGATTCCTTATTCAAGCCTGTATCTGAGAAAGATGATGAAGGCATTATCAGGGAACTTCTGATTGATTTCTACACAAGTTCTGGGAAGAGGAAACCAGAGAATGTAATCATATTCAGGGATGGAGTCAGCGAGTCGCAGTTCAACCAAGTTTTGAATCTTGAACTTGATCAAATTATTGAGGCCTGCAAATTTCTTGATGACAAGTGGAACCCCAAGTTTACAGTAATTGTTGCCCAGAAAAACCATCACACCAAATTTTTCCAGCCTTCATCTCCTGACAATGTCCCCCTGGTAAGTGTTCGCTTAGATGTTATTGAAATTTCCAAGATTCATTTAGTAGGATTCCCTCCCCCTTTCTTCCTAATCGTCCTTTTCTTCTGTTCTTCAGGTACTGTTATTGACAACAAAGTTTGCCATCCTCgcaattatgatttttatatgtgTGCGCACGCTGGCATGATTGGAACTAGCAGGCCTACCCATTACCATATTCTGTACGATGAGGTTGGATTCTCACCTGATGATCTGCAGGAACTCGTGCATTCTCTATCTTACGTGTACCAGAGGAGCACCACTGCCATTTCTGTTGTTGCACCTATATGCTATGCGCACTTGGCTGCTACTCAGTTGGGTCAGTTCATGAAATTTGAGGACAAGTCTGAGACATCTTCTAGCCACGGTGGGGTGACAGCTCCTGGAGCTCCTGCTGTTCCTCCAATGCCGAAATTGAATGAGAATGTCTGCAACTCTATGTTCTTCTGTTG 2822 0.4288 MPHNGEQDALPPPPPVVPPHVVPVKAESELPPGPVKKKASRVPMARRGLASRGNKLSLLTNHFKVSVSKIDGHFFHYSVSLSYEDGRPVEGKGVGRKVIDKVQETYDSELNGKPFAYDGEKSLFTIGPLPRNKLEFTVLLEEMTSNRNNGNCSPDGYGSPNETDRKRMRRPYRSKSYKVEITFAAKIPMQAIASALRGHESENFQEAVRVLDIILRQHAAKQGCLLVRQSYFHNDPRNFADVGGGVLGCRGFHSSFRTTQGGFSLNIDVSTTMIIQPGPVVDFLIANQNARDPFSLDWTKAKRMLKNLRIMASPSNQEYKITGLSDRPCREQTFTLKNKGGGEDDAVEVTVYDYFVNHRNIDLRYSADLPCINVGKPKRPTYLPVELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMKVLTDALKVNNYDAIPMLRNCGISISSGFTQVDGRVLQAPKLKVGNGEDLFPRNGRWNFNNKKLAQPTKLERWAVVNFSARCNVQQLVRDLMKVGDMKGLPIEQPFDVFEENPQFRRAPPLVRVEKMFEEIQSKLPGAPQFLLCLLPERKNCDLYGPWKKKNLAEFGIVTQCLAPTRINDQYLTNLLLKINAKLGGLNSLLSVETPPSIPLVSKTPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDSLFKPVSEKDDEGIIRELLIDFYTSSGKRKPENVIIFRDGVSESQFNQVLNLELDQIIEACKFLDDKWNPKFTVIVAQKNHHTKFFQPSSPDNVPLVSVRLDVIEISKIHLVGFPPPFFLIVLFFCSSGTVIDNKVCHPRNYDFYMCAHAGMIGTSRPTHYHILYDEVGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGVTAPGAPAVPPMPKLNENVCNSMFFC 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02996 940 ProSiteProfiles Piwi domain profile. 561 901 IPR003165 GO:0003676
Bva12g02996 940 SMART DUF1785_2 225 277 IPR014811 -
Bva12g02996 940 MobiDBLite consensus disorder prediction 147 170 - -
Bva12g02996 940 CDD Piwi_ago-like 436 895 IPR045246 -
Bva12g02996 940 Pfam N-terminal domain of argonaute 56 215 IPR032474 -
Bva12g02996 940 ProSiteProfiles PAZ domain profile. 302 392 IPR003100 GO:0005515
Bva12g02996 940 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 815 939 - -
Bva12g02996 940 MobiDBLite consensus disorder prediction 1 46 - -
Bva12g02996 940 SMART PAZ_2_a_3 278 417 IPR003100 GO:0005515
Bva12g02996 940 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g02996 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 786 - -
Bva12g02996 940 SMART Piwi_a_2 561 901 IPR003165 GO:0003676
Bva12g02996 940 CDD PAZ_argonaute_like 277 391 - -
Bva12g02996 940 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 786 - -
Bva12g02996 940 Gene3D paz domain 271 396 - -
Bva12g02996 940 SUPERFAMILY Ribonuclease H-like 545 899 IPR012337 -
Bva12g02996 940 Pfam Mid domain of argonaute 472 524 IPR032473 -
Bva12g02996 940 SUPERFAMILY PAZ domain 272 433 IPR036085 GO:0005515
Bva12g02996 940 Pfam Argonaute linker 1 domain 227 275 IPR014811 -
Bva12g02996 940 Gene3D - 628 940 IPR036397 GO:0003676
Bva12g02996 940 Pfam PAZ domain 281 408 IPR003100 GO:0005515
Bva12g02996 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 815 939 - -
Bva12g02996 940 Pfam Argonaute linker 2 domain 418 463 IPR032472 -
Bva12g02996 940 Gene3D - 456 622 - -
Bva12g02996 940 Pfam Piwi domain 562 901 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02996 Bva-Chr12 21398326 21405559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02996 35 940 Eukaryotic Initiation Factors Gene Family AT5G43810 34.690 1.77e-161 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02996 K11593 - qsu:111991924 1533.47