Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02988 ATGGCCAAGAAGCGAAAGCTTCATTCTTCTGAACCGGAATCTACCAAACCAGTAGAATCACAACCCCCACCGCAAGAGGAGCAAATCCCCGAAGAAACAGTGGACGAACAACCCCAACCTGAAGTAACCCCGGAGGAAGAGCCCCAGGGACCTGAAATCGTGACCGTAGATGGTGATACTCAGCAAGAAGAAGCGCGGGAACAAGAAGTAGTCGATGAAGAAGAAACCCAAGAGCAGGTCGAAACTGCAGAAGTTTCGAACCATGCTGCTCCATCTGGATCAGCTGAGCACGAAGCAAATGGAGGTGAGGGAGCTGAGGAAGGTAATGAGAATGAAGATGAGTGGGAGGATCTGGATGAGGAGCCTGTGGAGAAGCTTCTGGAGCCTTTCACGAAGGAGCAGCTTCACTCTCTTGTCAAACAAGCGGTGGAGAAGTACCCAGATTTCATAGAGAATGTTCGTGAGCTGGCGGATGTGGACCCTTCTCACCGCAAGATTTTTATCCATGGCCTTGGCTGGGACACCACCGCTGAAACCCTTACCAGTGTGTTTGGGAAGTATGGCGAAATTGAGGATTGCAAGGCTGTTACTGATAAGGTCTCTGGGAAGTCCAAAGGCTATGCTTTTATCTTGTTTAAGCACCGAAGTGGTGCTAGGAACGCTCTGAAGCAGCCCCAGAAGAAGATTGGGAACCGAACTACTTCATGTCAATTAGCTTCAGCTGGACCTGTTCCGGCACCACCAGCTGCGACTGCACCGGTACCTGAATATACTCAGAGGAAGATCTTTGTAAGCAATGTGAATCCAGAGGTTGATCCCCTGAAGTTGCTTGAGTTCTTTAAGCAGTTTGGGGATATAGAAGATGGTCCATTGGGTCTTGATAAGCAGACGGGGAAGCCTAAGGGGTTTGCACTTTTTGTGTACAAGTCGGTAGAGAGTGCTAAGAAGGCTTTGCAAGAGCCGCACAAGAACTTTGAGGGGCACACATTGTATTGTCAAAGGGCTATTGATGGTCCTAAAGGAAACAAGCCATATCATCAGCACCAGCATCAGCATCAACACCATTCTCATCATCAGTCACACTACCACtcgagaaaagaaaagaataagtaTCCTACTGGTGCGCCAGCGGCAGGATCTGGACATTTGATGGCACCATCAGGCCCTGCTGTGGGTTTCAATCCAGGAGTGCCACCCCAGGGCTTGAACCCCGCACTTGGGCAGGCCCTGACTGCTTTGCTTACAACCCAAGGAGCTGGGTTAGGATTTGATAATCTGTTTGGAGGCGTTGGTGGTGCGCATATGAACCAGTCTGGGCTACCTGCTGCATATGGTAACCAGGCTGCTCTGAGTTATGGGAATCAGCCTGGAATGCAACCGGGATACCAGAATCCACAAATGGGACAGAGCAGTGCTGTTAGGCCTCATCCTGGTGCTGGTGGTCCTTACACGGGTCATTA 1460 0.4973 MAKKRKLHSSEPESTKPVESQPPPQEEQIPEETVDEQPQPEVTPEEEPQGPEIVTVDGDTQQEEAREQEVVDEEETQEQVETAEVSNHAAPSGSAEHEANGGEGAEEGNENEDEWEDLDEEPVEKLLEPFTKEQLHSLVKQAVEKYPDFIENVRELADVDPSHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARNALKQPQKKIGNRTTSCQLASAGPVPAPPAATAPVPEYTQRKIFVSNVNPEVDPLKLLEFFKQFGDIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALQEPHKNFEGHTLYCQRAIDGPKGNKPYHQHQHQHQHHSHHQSHYHSRKEKNKYPTGAPAAGSGHLMAPSGPAVGFNPGVPPQGLNPALGQALTALLTTQGAGLGFDNLFGGVGGAHMNQSGLPAAYGNQAALSYGNQPGMQPGYQNPQMGQSSAVRPHPGAGGPYTGH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02988 486 MobiDBLite consensus disorder prediction 105 119 - -
Bva12g02988 486 Gene3D - 249 372 IPR012677 -
Bva12g02988 486 SUPERFAMILY RNA-binding domain, RBD 156 242 IPR035979 GO:0003676
Bva12g02988 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Bva12g02988 486 MobiDBLite consensus disorder prediction 345 365 - -
Bva12g02988 486 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 473 - -
Bva12g02988 486 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 473 - -
Bva12g02988 486 Gene3D - 53 246 IPR012677 -
Bva12g02988 486 MobiDBLite consensus disorder prediction 1 119 - -
Bva12g02988 486 CDD RRM_RBM24_RBM38_like 260 335 - -
Bva12g02988 486 SUPERFAMILY RNA-binding domain, RBD 244 352 IPR035979 GO:0003676
Bva12g02988 486 SMART rrm1_1 165 237 IPR000504 GO:0003723
Bva12g02988 486 SMART rrm1_1 261 333 IPR000504 GO:0003723
Bva12g02988 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 233 IPR000504 GO:0003723
Bva12g02988 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 330 IPR000504 GO:0003723
Bva12g02988 486 MobiDBLite consensus disorder prediction 455 471 - -
Bva12g02988 486 MobiDBLite consensus disorder prediction 455 486 - -
Bva12g02988 486 MobiDBLite consensus disorder prediction 336 384 - -
Bva12g02988 486 MobiDBLite consensus disorder prediction 66 80 - -
Bva12g02988 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 343 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02988 Bva-Chr12 21363203 21366550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02988 256 339 C2H2 Transcription Factor Family AT2G19380 29.762 4.50e-08 53.9