Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02978 ATGGGAAATTGCTGGCGGAAACCCATTGCCCATGTTTCTTCCTCCAATATTTCTGGAAGTTCAAAGACTCATAGCAAGAAAAAGCAGGATTTAAATTCTGCAGAACGGGAAACTGCTTTGAAAAGTTTGGATCAATCTCCTAAAGCATCAAATCTTAAATCCTTCACCGTCAGTGATCTAAAGGATGCCACAAAGAATTTCCggcaagaaaatttaattggaGAGGGTGGCTTTGGTCGTGTCTTCAAGGGATGGATTGACGGGAATACTTTTGCCCCCACAAGACCGGGGAGTGGGATTGTAGTGGCCATCAAGAAACTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTAGCAGAAGTCAATTATCTAGGCCAGCTGCACCACGTAAATCTGGTGAAACTAATTGGTTATTGCTCAGATTCAACACATAGGCTTCTAGTTTACGAGTTTATGCAGAAAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCCTTACCCTGGGCTACAAGGATCAATATAGCAACTGGTGTTGCCAGAGGCTTAGCATTCTTGCATAGCTTGGACAAAAATGTTATCTATCGTGACTTAAAGGCTTCCAATGTCCTTCTTGATTCAGATTTCAACGCAAAGCTTTCTGATTTTGGCTTGGCAAGAGATGGTCCTACTGGTGATAACACTCACGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCACTTGACCCCAAGGAGTGATGTATACAGTTTTGGTGTCGTCTTATTAGAGTTACTCTCTGGAAGACGTGCATTAGACGATGAGAAAGCCGGCACATCGGaagaaactctggtggagtgGGCAAGGCCTTTCCTGACTGATAGCAAACGGGTTTTGAGAATCATGGACACTAGGTTGGGTGGTCAATACACCAGGAGAGAAGCACAAGCTGCAGCTTCACTTGCATTGCAGTGCCTGAACAATGATCCCAAATTTAGACCATCTATGAAAGATGTTCTTGCAGCATTGGAAGGACTCCATTCCTCAAATTCAATCCCAAGTCCCTTGCCAAGGACCCCAAAATCTGGAAATGGTAACCATGCAACCAGGCATTCTTCTAGTCACACCCAAAAGACAACTGCATATTCAAACTA 1169 0.4226 MGNCWRKPIAHVSSSNISGSSKTHSKKKQDLNSAERETALKSLDQSPKASNLKSFTVSDLKDATKNFRQENLIGEGGFGRVFKGWIDGNTFAPTRPGSGIVVAIKKLKPESFQGHKEWLAEVNYLGQLHHVNLVKLIGYCSDSTHRLLVYEFMQKGSLENHLFRKGVQPLPWATRINIATGVARGLAFLHSLDKNVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLSGRRALDDEKAGTSEETLVEWARPFLTDSKRVLRIMDTRLGGQYTRREAQAAASLALQCLNNDPKFRPSMKDVLAALEGLHSSNSIPSPLPRTPKSGNGNHATRHSSSHTQKTTAYSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02978 389 Gene3D Transferase(Phosphotransferase) domain 1 153 359 - -
Bva12g02978 389 PANTHER OS01G0588500 PROTEIN-RELATED 17 381 - -
Bva12g02978 389 MobiDBLite consensus disorder prediction 23 37 - -
Bva12g02978 389 MobiDBLite consensus disorder prediction 353 389 - -
Bva12g02978 389 Gene3D Phosphorylase Kinase; domain 1 37 152 - -
Bva12g02978 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Bva12g02978 389 SUPERFAMILY Protein kinase-like (PK-like) 51 378 IPR011009 -
Bva12g02978 389 MobiDBLite consensus disorder prediction 1 46 - -
Bva12g02978 389 CDD STKc_IRAK 73 351 - -
Bva12g02978 389 Pfam Protein tyrosine and serine/threonine kinase 70 347 IPR001245 GO:0004672|GO:0006468
Bva12g02978 389 ProSitePatterns Protein kinases ATP-binding region signature. 73 106 IPR017441 GO:0005524
Bva12g02978 389 ProSiteProfiles Protein kinase domain profile. 67 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02978 389 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 381 - -
Bva12g02978 389 SMART serkin_6 67 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02978 Bva-Chr12 21290778 21293957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02978 20 348 Glycoside Hydrolase AT3G07070 48.060 8.33e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva12g02978 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02978 - - gmx:102664409 586.645