Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02970 ATGAATGATGGTGATGGCCGGAAAATGTCTAAGGGTTGCCAACCTTTGTCATCAGTTGAAGAAGGAAGTAATGGAGATAACATAGGAGGAGAAGTTCCATTGAAGAAAGGTCCCTGGACATCCACAGAGGATGCAATATTGGTGGAATATGTCCAAAAGCATGGAGAGGGTAACTGGAATGCCATTCAAAAGAGCACAGGGCTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGCTGGGCAAATCACCTAAAACCAGATTTAAAGAAGGGTGCATTTAGTCCAGAAGAAGAacgaaaaataattgaattccaTGCTAAGTTTGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCCGGACGAACTGACAATGAGATAAAGAACTATTGGAATACAAGAATTAAAAGAATGCAACGAGCTGGCTTACCAGTATACCCTGCTAACATATGCCGGCAGGTGTTGAATGATAGCCAAGAAAGTCCAAATGCGGGTAGCGTGATGAGTGGAGCCAGCCAGAATTCTGATCTCTCACAGATAGACAGTTATACCGTACCTGACGTAcagttcaaaaatttaaaactcacTCAGTATGGACCAACCATTTTTAATATTCCTGAAAGCACTCACAGCATGTTTGAACAAAGTGCTGGTTCATTCCAAAACTATAATATGATGTTCCCAATGAAGCCCCGTAAACGCCCTCTGGAAACAGATATTATTGGCAATAGTTTGGTCGGTAGCATTAGCACTACTGTCCCAGAGTTTAATCCGTATGTGGATTATTCTTCTGAGAAAATTACTGATTCCCCTAAGCTGTCTTTTCCATGTGATCCTAATCTTAACAGCAATGGTCCATTTCATGTTTACCTTCCTGGCAGCTATGCCGGTTTAAATGACAATACCTCTTCTGTGCCCATATCTGGGGTCAAGAAGTTGGAGCTCCCTTCATTCCAATTTTCGGAAACCCAAAGAGTTGGCTGGGACACACCTGGATCCCATCTTCCTTCACTTGAGTCTGTTGATACATTGATCCAGTCTCCACCAGCTGATCAGACTCAATCATATCTTGTTTCTTCAGATAGTGATGGTTTGTTAGAATCGGTAGTTTATGGATCAAAGACAAAGAGAGgtgcaaataataatttcctCCAGCAGACTGCTGATAATTGCATGCCCAGAAGTTCAACCGTAAACCCTTGTGACACAGGATGGGCAGAACAATCTCCATCAGCTGATCAGACTCAATCATATCCTGTTTCTCCAGACACAGATGGTTTGTTAGAATCGATAGTCTATGGATCAAAGACAAAGAGAGGATGGGACGAACAAGGGGACCTAAGTTCTCCCGGTGCATCAGTTCTTACTGTACACACTCCTATAAGCATGGGCTCGGTGGATGAACCCCAATCAGTTGAAGCCACACAGGATCAAGATGTTAAGCACGAAACAGTCTTTCAGGACCCAACTTACTATTCCAGGAAGAAAGAATGTGTCAATCAGATAGGCCTTAAAAAGCCAGATGCTGCTTTGTTTGATTCGGGATGGCGTGGGAATCCTGACGCTGATAACAAGAGTGATCAATCTAATCCAAAAGATGATCTAGGTGcagtttttccttttgactTCCATGGTTATCCCTA 1640 0.4171 MNDGDGRKMSKGCQPLSSVEEGSNGDNIGGEVPLKKGPWTSTEDAILVEYVQKHGEGNWNAIQKSTGLARCGKSCRLRWANHLKPDLKKGAFSPEEERKIIEFHAKFGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPVYPANICRQVLNDSQESPNAGSVMSGASQNSDLSQIDSYTVPDVQFKNLKLTQYGPTIFNIPESTHSMFEQSAGSFQNYNMMFPMKPRKRPLETDIIGNSLVGSISTTVPEFNPYVDYSSEKITDSPKLSFPCDPNLNSNGPFHVYLPGSYAGLNDNTSSVPISGVKKLELPSFQFSETQRVGWDTPGSHLPSLESVDTLIQSPPADQTQSYLVSSDSDGLLESVVYGSKTKRGANNNFLQQTADNCMPRSSTVNPCDTGWAEQSPSADQTQSYPVSPDTDGLLESIVYGSKTKRGWDEQGDLSSPGASVLTVHTPISMGSVDEPQSVEATQDQDVKHETVFQDPTYYSRKKECVNQIGLKKPDAALFDSGWRGNPDADNKSDQSNPKDDLGAVFPFDFHGYP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02970 546 SMART sant 88 136 IPR001005 -
Bva12g02970 546 SMART sant 35 85 IPR001005 -
Bva12g02970 546 Pfam Myb-like DNA-binding domain 39 99 - -
Bva12g02970 546 MobiDBLite consensus disorder prediction 404 422 - -
Bva12g02970 546 MobiDBLite consensus disorder prediction 1 38 - -
Bva12g02970 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Bva12g02970 546 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Bva12g02970 546 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Bva12g02970 546 MobiDBLite consensus disorder prediction 404 424 - -
Bva12g02970 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 19 417 - -
Bva12g02970 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Bva12g02970 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 19 417 - -
Bva12g02970 546 Gene3D - 91 137 - -
Bva12g02970 546 CDD SANT 38 83 IPR001005 -
Bva12g02970 546 Gene3D - 35 88 - -
Bva12g02970 546 CDD SANT 91 132 IPR001005 -
Bva12g02970 546 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Bva12g02970 546 MobiDBLite consensus disorder prediction 509 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02970 Bva-Chr12 21249050 21253149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02970 34 392 MYB Transcription Factor Family AT5G06100 45.013 5.56e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02970 Myb_DNA-bind_6 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02970 K09422 - gmx:100800658 504.982