Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02969 ATGGTTTTTTATCGTTGGAGAGAGATTTTACTTGAATggaaatatgataaaaactaTGAGCAAAACTTTCAGATGGTTCAAGTTGAAGTTTTACCCCCTATGAAGGTTTGCCAAttctgcaaaaagaaattcaactcTGGACAAGCTTTAGGTGGGCACATCCGAACCCACTATAAAGAGTTGCGACGCAAAAACTACTTGAATCACtttaaaatggaagaagacTCATCATCAAGAAGCTCAAAGTTCCATGATGGTTTTCGTGTCTTACCAAAGAGCTGGGGATTTCGCCAGAAGCGAAGTTCAAGACTAGTAGTAATAAGAGACAAAACAGAAGCTCAAGTCAACACTAAAAGACAAGAACTTAAAGCTGCTGAAATTGCTGCTGAGGAAGAGGAAACTAATCATGATGGAGAAAGTGCCATGCTAGAGAGCTTAAAGGAACTTGCTGGTTCTTCTGAGCACCAGATTACGAGAAAAGGGAAAGGGGTTCAAGTATCTGAAGCGATTGGCACCGACGCCATTACAGAAGCTGAGGCCGCAGTTGTTGAAGGAAGTGATGGGAGTGGATCTGTTAATCAAGTTGCTGATGAAGCAAGTGCAAATTGCAAGAAGCTGGAGTTTGATCTCAATGAGCTGCTTCCGCTTCCTATTGAGGATAATGATGCATG 671 0.389 MVFYRWREILLEWKYDKNYEQNFQMVQVEVLPPMKVCQFCKKKFNSGQALGGHIRTHYKELRRKNYLNHFKMEEDSSSRSSKFHDGFRVLPKSWGFRQKRSSRLVVIRDKTEAQVNTKRQELKAAEIAAEEEETNHDGESAMLESLKELAGSSEHQITRKGKGVQVSEAIGTDAITEAEAAVVEGSDGSGSVNQVADEASANCKKLEFDLNELLPLPIEDNDA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02969 223 Pfam C2H2-type zinc finger 36 60 - -
Bva12g02969 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Bva12g02969 223 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Bva12g02969 223 Coils Coil 108 135 - -
Bva12g02969 223 Gene3D Classic Zinc Finger 36 88 - -
Bva12g02969 223 SUPERFAMILY beta-beta-alpha zinc fingers 36 61 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02969 34 144 C2H2 Transcription Factor Family AT5G43540 32.432 1.67e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02969 zf-C2H2_6 1.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02969 - - ath:AT5G43540 51.6026