Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02968 ATGGATTTTGATCCAGAGAATCAATCTGAAGATGGGTTTGATCAGATTGAAGACGAACAAGCTTCTGATCAAGAAGCGGAGAAGCTGAAAGGATCTTCCAGTGAAGATGAAAACCCTAGGACTGCAGATGAGGGAACAGTTCAGAATCCAGCTTCAACAATCCGAATCTGCGACTTTTGTGGCAGAACTTTCAACAATGGAAAAGCTTTGGGTGGACACAGAAGATATCACCTTCAGCTTCTGAGGAAAGAAGCTGCAGCTCGATCCCAGAAGGTGAAAATTCGTCTCCCAAAAACTAAGAttcataataatgataataattcaaattgtGTCAATGATGttgaagataataatattctCAAGATGGAAGCTTTGATTTCAAAGAACAatggaggaaaaggaaaaggaaaacccACTTGTGATCTTTGCAACAAGGATTTCCCTTCCATGAAATCCTATTATGGGCACATGAGATCACACCCTGAGAGGATTAGGAGGGCTGTTTTGCTTCCCCTACCTCGCTCTCCCAAGTCTGATGATGATTCTGCGGATCAGAAAGAAGATAACGTTGCTGCTAATAGTAGGACTGTGATTGCACCAGTTGATGATGAATCATCTGTTCGTCTAACAAAATCTTTACCCAGCTGGGCTAAGACTGATCAAAGGGGCAGGAAAAGCATTGGTGGCGCCGAGGCTGCTCAAAATCTTGTTTATCTCTCTCGTGGAGGGTACTTTTCTGCTCCTCAAGCTGCTTACTCTGCTAATGTGGATGACTCCAAGAGTAGTAATTCTGGAGTTTCCTTGCAGCGTAAGAAAATCAAGGTAGAAGATGATTCTCTTccaaggaaacaaaaaatgagGAAGATAGAAGCTTGTAGAAGAGGTAAGCTGAAGTTGGGTGAAAAAATTGATGAGAATGATGATGGCTGTGGGAATGGAAAAATTATGGATATTGTTGATAAGGAAGAGGAGAAGGAGGAGGAGGGGGAAGGTAATGCTGATTGGGGCGAAGAAGAATGTGAGAAGACTATGAAGATTGATGATAGCCACTTAGATGAAAGTAAGATGATGacaaagaagaaggagaacaagagaaagaagatattgAAGTTGAAGTTTTCTGAAAGCCTGGAATCTGAAGAAAACCCTCTCATAAAGACTCTAAAGACAAAGGATGGGCATAAATGTAAATCTATTGCACTGTTCCGAGCCCTAGGGGAACATAGATCCAGCCAcaacaaagagaagaaaattaaaaccatGGATGAGTTAGAGGATAAGAATAATGAGACCAAGGGAAATAAACTTAGAGGACTAGTGGTAGAGGAAGCTGACACTGCACATGCTTTTGGTGATCATCACAGAAGGTTGAATTCTAGAAGATCAGCTGCTGAGACACAATTGAGTGAAGAAGCATCATCAGTTGGAGCCAGTTTGTCTCCTTCTACTCAAGAACTTGGAGAGGCAAGTCCATTAACTCCCAGAGTGTTAGATTTTGATCTGAATGAGCCATATGTCACAGACGATAAAGAAGTTAAGTCAACATTTTCTCAGGAATG 1559 0.3823 MDFDPENQSEDGFDQIEDEQASDQEAEKLKGSSSEDENPRTADEGTVQNPASTIRICDFCGRTFNNGKALGGHRRYHLQLLRKEAAARSQKVKIRLPKTKIHNNDNNSNCVNDVEDNNILKMEALISKNNGGKGKGKPTCDLCNKDFPSMKSYYGHMRSHPERIRRAVLLPLPRSPKSDDDSADQKEDNVAANSRTVIAPVDDESSVRLTKSLPSWAKTDQRGRKSIGGAEAAQNLVYLSRGGYFSAPQAAYSANVDDSKSSNSGVSLQRKKIKVEDDSLPRKQKMRKIEACRRGKLKLGEKIDENDDGCGNGKIMDIVDKEEEKEEEGEGNADWGEEECEKTMKIDDSHLDESKMMTKKKENKRKKILKLKFSESLESEENPLIKTLKTKDGHKCKSIALFRALGEHRSSHNKEKKIKTMDELEDKNNETKGNKLRGLVVEEADTAHAFGDHHRRLNSRRSAAETQLSEEASSVGASLSPSTQELGEASPLTPRVLDFDLNEPYVTDDKEVKSTFSQE 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02968 519 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Bva12g02968 519 Gene3D Classic Zinc Finger 55 160 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 321 364 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 336 359 - -
Bva12g02968 519 SMART c2h2final6 138 160 IPR013087 -
Bva12g02968 519 SMART c2h2final6 55 77 IPR013087 -
Bva12g02968 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Bva12g02968 519 MobiDBLite consensus disorder prediction 1 48 - -
Bva12g02968 519 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 9 509 - -
Bva12g02968 519 Coils Coil 414 434 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 407 461 - -
Bva12g02968 519 SUPERFAMILY beta-beta-alpha zinc fingers 56 160 IPR036236 -
Bva12g02968 519 MobiDBLite consensus disorder prediction 22 42 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 502 519 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 462 489 - -
Bva12g02968 519 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g02968 519 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 9 509 IPR044653 GO:0003700
Bva12g02968 519 MobiDBLite consensus disorder prediction 407 519 - -
Bva12g02968 519 Pfam C2H2-type zinc finger 140 162 - -
Bva12g02968 519 Pfam C2H2-type zinc finger 56 78 - -
Bva12g02968 519 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bva12g02968 519 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02968 Bva-Chr12 21237566 21239229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02968 56 173 C2H2 Transcription Factor Family AT2G26940 25.600 3.10e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02968 zf-C2H2_6 0.00056 CL0361