LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02966	ATGGCTGTTACCTTTTCAGATCTTCACACCGAATCGGGCCTCAAATCCCTCGATCATTTCCTTTCTGGGAAGACCTATATTTCTGgGAATCAATTGACAAAAGATGATATCAAAGTCTATGCATTTGTTTTGGAGAAGCCAGGAGATTCTTTCCCCAATGCTAGCAAGTGGTACCACGCCGTCTCCAGCCAGCTGGCTGCAAGCTTTCCTGGTAAAGCTCAAGGAGTAAGATTCGGTGGCAAAGCTGCAGCTCCAGCTGAAGCTGCTCCTGCCAAGGCTGCcgctgatgatgatgatgacctTGATCTCTTTGGTGACGAGACAGAGGAGGAAAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAACCcgcaaagaagaaagagaGTGGGAAGTCTTCAGTTCTGCTCGAAGTCAAACCTTGGGACGATGAGACAGACATGAAGAAGCTCGAAGAAGCTGTTCGTGCCATCGAGCAGCCCGGTCTATTATGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGTATCAAGAAGATGCAGATCATGATGACTATCGTTGATGACCTTGTATCAGTGGACTCTCTTATTGAGGAGCACCTTACAGTTGAGCCATGCAGTGACCATGTCCAGAGCTGTGACATCGTCgccttcaacaaaattta	665	0.4436	MAVTFSDLHTESGLKSLDHFLSGKTYISGNQLTKDDIKVYAFVLEKPGDSFPNASKWYHAVSSQLAASFPGKAQGVRFGGKAAAPAEAAPAKAAADDDDDLDLFGDETEEEKKAAEEREAAKKPAKKKESGKSSVLLEVKPWDDETDMKKLEEAVRAIEQPGLLWGASKLVPVGYGIKKMQIMMTIVDDLVSVDSLIEEHLTVEPCSDHVQSCDIVAFNKI	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02966	221	CDD	EF1B	130	221	IPR014038	GO:0003746\|GO:0006414
	Bva12g02966	221	MobiDBLite	consensus disorder prediction	109	129	-	-
	Bva12g02966	221	Gene3D	-	125	221	IPR014717	-
	Bva12g02966	221	SUPERFAMILY	eEF-1beta-like	129	221	IPR036219	-
	Bva12g02966	221	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	210	221	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Bva12g02966	221	Pfam	EF-1 guanine nucleotide exchange domain	134	221	IPR014038	GO:0003746\|GO:0006414
	Bva12g02966	221	Gene3D	-	3	74	-	-
	Bva12g02966	221	PANTHER	ELONGATION FACTOR 1-BETA 2	1	221	-	-
	Bva12g02966	221	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	221	-	-
	Bva12g02966	221	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	97	105	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Bva12g02966	221	SMART	EF1_GNE_2	132	221	IPR014038	GO:0003746\|GO:0006414
	Bva12g02966	221	SUPERFAMILY	GST C-terminal domain-like	10	66	IPR036282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02966	Bva-Chr12	21217906	21220584	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g02966	1	221	Eukaryotic Initiation Factors Gene Family	AT5G12110	74.561	8.97e-109	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02966	K03232		-	gmx:100816855	317.005