Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva12g02965 | atgtCAAGTGGAGGAACACACTGGTGTCATGAGTGCAGGCAGCCGATCCGAATTGAAGGGAGAGATGTCATTTGCCCCAACTGTCATGGAGGCTTTGTGCAAGAACTTAATGAGATGCAAGGCTTTGCACCAGAGTTTCATCAAACACCtgatattttttatgccaCGCATGCAGCTCTCAGGCAACAGAGGGGTTCTGAACCGAGATTTCGTCTTGTGAGTGCTGTTGATAATTTCATCAGGCAGAGAATGGCTGGTAGAAACTCAAACTCTGACGTTAGAGAGAGGTCTGGTTCTGCCCCAGTTCCTGAACAGCATTGGGGTGTTTTTCGTTCTGGTccttatttgatatttcatgGTCAAGTTCCTGGATTCACCGTGAATAATCAACTGGAAGAACTCATTGAACAGATCCCCGTGAATGATCGGCGTGAACTGGAGTTAATTATTGAACAGCTCTCCATGAATGATCGTCATGGTCCACCTCCTCCGGCCTCAGTTTCTTCAATTGTTGCAATGCCTACTATTAAGATAACACAGGCACATCTTCACGCTGATTCACACTGCCCTGTCTGTCAAGATAGATTTGAACTCGGTTCTGAGGCTAGGATGATGCCATGTTACCATATATATCACTCTGATTGTATTGTTCCTTGGTTGGTCCAGCATAACTCATGTCCAGTTTGCCGGGTTGAGCTACCACTTGAAGGAGGAGCTATTAATTCTTGTGTCAATCGAAGCCGGGGGGAATGGAATGATGGCAGCAGCAGTGACAATGATAGCTCTAGGGGCAGAGAGAATAGCCAGCAGAACCATGGAAGGAGAAATCCACTATCGTTTTTATGGCCATTCCGTTCTTCTAGTTCGAACACTAATTA | 878 | 0.4442 | MSSGGTHWCHECRQPIRIEGRDVICPNCHGGFVQELNEMQGFAPEFHQTPDIFYATHAALRQQRGSEPRFRLVSAVDNFIRQRMAGRNSNSDVRERSGSAPVPEQHWGVFRSGPYLIFHGQVPGFTVNNQLEELIEQIPVNDRRELELIIEQLSMNDRHGPPPPASVSSIVAMPTIKITQAHLHADSHCPVCQDRFELGSEARMMPCYHIYHSDCIVPWLVQHNSCPVCRVELPLEGGAINSCVNRSRGEWNDGSSSDNDSSRGRENSQQNHGRRNPLSFLWPFRSSSSNTN | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva12g02965 | 292 | MobiDBLite | consensus disorder prediction | 271 | 292 | - | - | |
| Bva12g02965 | 292 | MobiDBLite | consensus disorder prediction | 246 | 264 | - | - | |
| Bva12g02965 | 292 | CDD | RING-H2_RNF126_like | 189 | 230 | - | - | |
| Bva12g02965 | 292 | Pfam | Ring finger domain | 188 | 230 | IPR001841 | - | |
| Bva12g02965 | 292 | MobiDBLite | consensus disorder prediction | 246 | 292 | - | - | |
| Bva12g02965 | 292 | SMART | ring_2 | 189 | 229 | IPR001841 | - | |
| Bva12g02965 | 292 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 291 | - | - | |
| Bva12g02965 | 292 | PANTHER | OS03G0351800 PROTEIN | 1 | 291 | - | - | |
| Bva12g02965 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Bva12g02965 | 292 | SUPERFAMILY | RING/U-box | 172 | 235 | - | - | |
| Bva12g02965 | 292 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 | |
| Bva12g02965 | 292 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 230 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva12g02965 | Bva-Chr12 | 21213709 | 21216338 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva12g02965 | 142 | 236 | C3H Transcription Factor Family | AT5G01980 | 44.330 | 2.83e-21 | 91.7 |