Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02928 ATGGCTTTTGCTTTCGAGAGGTGTGAGGAGAACATGGTGTTCCCCATGGAAACTCAGAAGTCAGTGCCTGCACCCTTCTTGACTAAGACATACCAGATTGTTGATGATCCTCACACTAATCACATTGTTTCTTGGGGTGAAGATGAAACTACATTTGTCGTCTGGAGACCACCTGAGTTTGCTGGAGATCTCCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTAAGGCAGCTTAATACCTATGGTTTCAAGAAGATAGTGGCTGATAGGTGGGAGTTTGCAAATGAGCACTTCAGAAAAGGAGCAAGGCACCTCTTATGTGAAATCCACAGAAGAAAAAACCATCATCACCACCAACACTTCCATGATCAACCAGCACAGCTTCAGCAGCTTCTTCAACCAGATCATGAGAGCCTTTGTTGGATTGACACAGCTCCATTAATGCCACATTCTCCTAAATCAGGAGGCACTGACATGCTAACAGCACTTTCTGAAGACAACCAAAGACTGAGGAGAAAGAACTTGATGCTCTTATCAGAACTCACCCACATGAAGAGTCTCTATAATGATATCATATACTTCATCCAAAACCATGTAAAGCCAGCAGGAGCTCCCTTTGAGCAAAGAAGCAGTACTAATGCTGCTGCTATTCCAAAGCTTGTAGCATTGGATTCATCACCTCATCAAGCTGATCCTAATGTGATGATGAGTGTTGCAACAACAGTGAAAAATATCAGTAAGTCTTTGATCACTACAAGTCATCATGAGGATGCAAACAGTACTGTGAAGCTTTTTGGAGTTTCTCTAAGTGGAAAAAAGAGAATGCATCCAGAAAACACTGATAAATA 857 0.4201 MAFAFERCEENMVFPMETQKSVPAPFLTKTYQIVDDPHTNHIVSWGEDETTFVVWRPPEFAGDLLPNYFKHNNFSSFVRQLNTYGFKKIVADRWEFANEHFRKGARHLLCEIHRRKNHHHHQHFHDQPAQLQQLLQPDHESLCWIDTAPLMPHSPKSGGTDMLTALSEDNQRLRRKNLMLLSELTHMKSLYNDIIYFIQNHVKPAGAPFEQRSSTNAAAIPKLVALDSSPHQADPNVMMSVATTVKNISKSLITTSHHEDANSTVKLFGVSLSGKKRMHPENTDK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02928 285 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 18 277 - -
Bva12g02928 285 Gene3D - 18 117 IPR036388 -
Bva12g02928 285 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 277 IPR027725 -
Bva12g02928 285 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva12g02928 285 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02928 Bva-Chr12 21005330 21006540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02928 20 279 HSF AT1G46264 50.831 8.57e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva12g02928 HSF_DNA-bind 7.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02928 K09419 - gmx:100527682 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02928 12 21005330 21006540 Bva12g02928 12 21005330 21006540 ECH