Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02920 ATGGGCAACTGTTGCTCCGGCAACACTGCAGAGGCCCCGGCCACAGACGACAAGGGAgaaccaaaacataaaaatgataacaatgcagaagaaggagaaagcgACCACCCAGCCAACCGCACTAACTCTTCAAATCCCAAGCCATCACATTCAGCATCACAGAGCAATAATAAAAACTCCAAAGCTGGCGCCATCGGGCCGGTCCTCGGCCGGCCAATGGAGGACGTGAAAGCCACTTACACCATTGGCAAAGAGCTAGGGAGAGGCCAATTTGGTGTAACACATCTATGCACCCACAAGGCCACAGGACAACAATATGCATGCAAAACAATAGCAAAGAGAAAACTTGCGAATAAAGAGGATATAGAGGATGTTAGGAGGGAGGTCCAAATCATGCACCATTTGGCAGGGCAAGCTAATGTTGTGGAGCTAAAGGGTGCCTTCGAAGACAAGCAATCGGTGCATTTGGTGATGGAGTTGTGTGCTGGAGGAGAGTTGTTTGATCGTATCATCACAAAGGGTCATTACACAGAGCGTGCAGCAGCTTCATTGTTAAGAACAATTGTTCAGATTGTCCACACTTGCCATTCCATGGGTGTTATTCATAGAGATCTTAAACCGGAGAATTTCCTCCTGCTCAATAAGGAAGAGAATTCCCCCCTCAAGGCCACAGATTTCGGTCTATCCGTTTTTTACAAGCAAGGAGACTCGTTTAAAGATATTGTTGGTAGTGCTTATTACATTGCTCCTGAGGTCTTGAAGAGGAAATATGGCCCAGAGGTTGATATATGGAGTGTTGGTGTCATGCTATACATTCTTCTAAGTGGAACTCCTCCATTTTGGGCAGAATCTGAACATGGAATTTTCAATGCCATCTTACGAGGCCACATTGACTTCTCAAGTGATCCATGGCCTTCCATTTCACCTCAAGCAAAAGATCTTgtaaagaaaatgttgaattCAGATCCCAGGCAACGGTTAACAGCATACCAAGTCCTGAaTCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATAGACCACTTGACAACGCAGTGCTGAATAGGCTCAAACATTTCAGAGCTATGAACAAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGCTGCCTATCTGAGGAAGAAATCATGGGATTGAAGGAGATGTTCAGAGGTATGGACACTGACAACAGTGGAACCATTACACTTGAAGAGCTCAAGCAAGGGCTTGCTATGCAGGGAACAAGGTTGACTGAACAAGAAGTCAAGCAATTAATGGAAGCTGCTGATGCTGATGGAAATGGAACAATCGATTATGATGAATTCATCACAGCAACAGTGCATATGAACCGAATGAATAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAATAGCGGTTTCATTACCACTGAAGAACTAGAGCAAGCTCTCCGTGAATATGGCATGCACGATGGAAGGGATATCAAGGAAATCATTTCCGAAGTTGATGGTGATAATGATGGTCGTATTAATTATGATGAGTTTGTTTCTATGATGAACAAAGGAAACCCAGAAGCCCAAACCATGAGGAAAAGGCGTGATTCATTTATTGCCTG 1610 0.428 MGNCCSGNTAEAPATDDKGEPKHKNDNNAEEGESDHPANRTNSSNPKPSHSASQSNNKNSKAGAIGPVLGRPMEDVKATYTIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLANKEDIEDVRREVQIMHHLAGQANVVELKGAFEDKQSVHLVMELCAGGELFDRIITKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKEENSPLKATDFGLSVFYKQGDSFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGTPPFWAESEHGIFNAILRGHIDFSSDPWPSISPQAKDLVKKMLNSDPRQRLTAYQVLNHPWIKEDGEAPDRPLDNAVLNRLKHFRAMNKFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITLEELKQGLAMQGTRLTEQEVKQLMEAADADGNGTIDYDEFITATVHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREYGMHDGRDIKEIISEVDGDNDGRINYDEFVSMMNKGNPEAQTMRKRRDSFIA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02920 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Bva12g02920 536 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Bva12g02920 536 Pfam EF-hand domain pair 386 446 IPR002048 GO:0005509
Bva12g02920 536 Pfam EF-hand domain pair 455 517 IPR002048 GO:0005509
Bva12g02920 536 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Bva12g02920 536 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Bva12g02920 536 Pfam Protein kinase domain 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02920 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 526 - -
Bva12g02920 536 SUPERFAMILY Protein kinase-like (PK-like) 68 363 IPR011009 -
Bva12g02920 536 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Bva12g02920 536 ProSiteProfiles EF-hand calcium-binding domain profile. 492 523 IPR002048 GO:0005509
Bva12g02920 536 MobiDBLite consensus disorder prediction 1 70 - -
Bva12g02920 536 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Bva12g02920 536 Gene3D - 347 522 - -
Bva12g02920 536 SMART serkin_6 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02920 536 SUPERFAMILY EF-hand 378 518 IPR011992 -
Bva12g02920 536 SMART efh_1 492 520 IPR002048 GO:0005509
Bva12g02920 536 SMART efh_1 385 413 IPR002048 GO:0005509
Bva12g02920 536 SMART efh_1 421 449 IPR002048 GO:0005509
Bva12g02920 536 SMART efh_1 457 485 IPR002048 GO:0005509
Bva12g02920 536 ProSiteProfiles Protein kinase domain profile. 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02920 536 Gene3D Phosphorylase Kinase; domain 1 81 165 - -
Bva12g02920 536 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Bva12g02920 536 ProSitePatterns Protein kinases ATP-binding region signature. 86 113 IPR017441 GO:0005524
Bva12g02920 536 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 24 526 - -
Bva12g02920 536 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Bva12g02920 536 Gene3D Transferase(Phosphotransferase) domain 1 166 346 - -
Bva12g02920 536 CDD STKc_CAMK 80 337 - -
Bva12g02920 536 MobiDBLite consensus disorder prediction 38 62 - -
Bva12g02920 536 MobiDBLite consensus disorder prediction 15 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02920 Bva-Chr12 20969770 20973754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02920 1 534 EF-hand Containing Proteins AT5G12180 79.259 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva12g02920 Pkinase 1.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02920 K13412 - gmx:100781355 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02920 12 20969770 20973754 Bva12g02920 12 20969770 20973754 ECH