Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02898 ATGAACATGAATTGTGGTGTACAATACACGCGCCATGCATTAGCAGAGCACTTATTGCAAGTCTTGTGTGTTGTGGCTACTACAAGGAGGTTGCCTTCAGATTCTGGTGCTTTTGCAGACTGGGCGGCTACTTCCTCTTCCGCCGGCCGCGCTGCCCCGGACGAGCTTTCCCTCGGCTTCAATGCAGGCCCCACCGCCGCTGCCGGCGGAGCTGCCACCGGACCCGCCTCCGGAATGTGGTCCGGTGCCACAAGGTCAATCAATTATGGGCTTGCGCCACCTGAAATGGGCATGGTGGGACTTCGGGACCTTTTTGTGGTGGCGCCTGCTTCTTCTTTCCACCACCAACACCAGCACCAACACCACGACCCCGTCATGTCCTCTGATCCTCATTCCATCAACGGCTCAAACCCGGCCACTGCACTCGGCGTCGGAGTTGGTGTTGGCGTTATTCCTCTCCTTACGGCGGCTCCTTGTCTCGGTCCTACCAATATGGGAGTGGAGAATGAAAGCATGTTGGGTAACCGAAGCCGTAGTGGTGGAATTCAGTTCTGGCAGGAGCAGCAACCCCATTATATGAAGAAGCCAGGTTTGACTGAGCATAACAGTAGCTCCGGGAATTTACTTCTGGCTAGTGGCGGCAGCGGCAGCGGTGGCATAACTGCATCGGCCGCAAGTGCTGGAGGAACCACATGCCAAGACTGTGGAAACCAAGCAAAGAAAGATTGTAGTCATAGAAGGTGCAGGACTTGCTGCAAGAGTAGAGGTTTTGATTGCGCTACTCACGTTAAGAGCACGTGGGTTCCGGCATCTCGGCGGAGAGAACGACAGCTGATGGCGCAGGCGGCAGCCGTAGCACCTGGGTCTAGTGGATCTACTTCTGGTGCCAAGAAACCTAGACTCATTGCTTCACAAACCACAACTACTTCTCACACCTCAACTTCTAATACCACTCCTCCTAGGAGCTTTGACACTAGCTCTAGCCATCAAGATGCTGGTTTCAAAGAGCCATTGCCAGGTCAAGTGCGTGCACCGGCAGTGTTCAAGTGTGTTCGAGTGACGGCGGTTGATGACGGGGAAGATGAGTATGCTTACCAAGCTGTTGTGAAGATTGGAGGACATGTTTTCAAAGGGTTTCTGTATGATCAAGGGATTGACAATAGAGATGGTTATCCTAATCTATCTAAGCTGCATTTGGGTGGTGGTAGTGGCGGCAACGGAAGCGGTGGCGGTGTGGGGAGAAATGGGGCTTCATCTTCATCCCCAATGCTTGATCCATCTGATGTTTATGCAGCTTCTGGTGGAGGGTTACTTGGAGAATCAGCCTATGGTAATCCAATAAATTG 1346 0.529 MNMNCGVQYTRHALAEHLLQVLCVVATTRRLPSDSGAFADWAATSSSAGRAAPDELSLGFNAGPTAAAGGAATGPASGMWSGATRSINYGLAPPEMGMVGLRDLFVVAPASSFHHQHQHQHHDPVMSSDPHSINGSNPATALGVGVGVGVIPLLTAAPCLGPTNMGVENESMLGNRSRSGGIQFWQEQQPHYMKKPGLTEHNSSSGNLLLASGGSGSGGITASAASAGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMAQAAAVAPGSSGSTSGAKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKEPLPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGIDNRDGYPNLSKLHLGGGSGGNGSGGGVGRNGASSSSPMLDPSDVYAASGGGLLGESAYGNPIN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02898 448 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 231 273 IPR006510 -
Bva12g02898 448 MobiDBLite consensus disorder prediction 405 428 - -
Bva12g02898 448 MobiDBLite consensus disorder prediction 286 332 - -
Bva12g02898 448 Pfam Domain of unknown function (DUF702) 229 386 - -
Bva12g02898 448 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 96 448 - -
Bva12g02898 448 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 96 448 IPR007818 GO:0003700|GO:0006355
Bva12g02898 448 MobiDBLite consensus disorder prediction 278 338 - -
Bva12g02898 448 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 338 385 IPR006511 -
Bva12g02898 448 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02898 Bva-Chr12 20871802 20874604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02898 22 429 C2H2 Transcription Factor Family AT5G12330 52.113 1.33e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bva12g02898 DUF702 1.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02898 - - vvi:100251674 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02898 12 20871802 20874604 Bva12g02898 12 20871802 20874604 ECH