Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02895 ATGGaagAGTCTGGTGAATTGCATTCTGAAGAGAATAAAGTCGTTGTggagaagaataagaaaagaaggcTCAAAACACCAGCCCAGGTTACAGGCTTggagaaattttataatgAGCACAAATATCCAacagaagaaatgaaattagaaCTTGCTGAAGAGTTGGGGTTGACAGAAAAGCAAGTTTCTGGATGGTTTTGCCACAGACggttaaaagataaaagattgTTGAAAGATGAAGCTTGTGCTAATGTACGACAAGACCGTTCAAGTGGTGTCATCCAGGATCATGGCAGTGGACTGGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTACAAGCTACTTGATCCCAGAGAGGTTGAGAGCCGTGGCCTTTATGGTAATGATTTGTTGGCTGCAGATTTGACCTATGAACATAGAAGTCGTTATACAGAAAACATTAGTGGAAGGGATGACACATCATCTGAGAGTAGCTCATCTTTACAAGATAGGTCATTTCCTCAAGGTCAAGATATGTACAATATGGAGCCTTCAACATATCTAACACCAAACAGAGCTCTACCACCGTTAAATCCCAAGAGTGCAACTAACATGGGATATAAACCATCAGGGTATTTGAAAGTTAAAGGAGAGATAGATGCTATAACTTCTGTTAGGAAGCaaataggaaaaaattatCGGGAAGATGGTCCACCACTTGGTGTAGTATTTGATCCACTTCCTCCGGGGGCATTTGAGTATGAAACTGACGATCCAATCCAAGAACCATATTATGCTGCAAATCCTGCTCTTCCAAGTTCTCCGGAAATTTCTCCAGTGAAAAGGCAACCCAGTCTTAGCTCTAGATATGATTCATATAATGCCAAATTTAGCTCCCAGGATTCACATATGGAAGGAGCAGACCTTGGCTCCTTCCATGACTCTGATTTCCAGGATAAGAAATCGCACCAGCAGATAAAGCTAAGGCCAAATTTTCAGAGTCACACCAACCATTTGCCTGGCAGGAACTCTTCCTTGGATTTGTATGAAGATTCTATTGGAGAAGCGTCTGTTTATAATAGTGACAAGAATCATAGAAAGATCACTAAGAATGTTATTGAAGGAATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGGGAAGGCAGACTCACTGTTGCATGGCCATGACACTATCAATCCAAAGAATACACAAAGGAGTGAATATGTAAAATCTAAACCTTCAAATTCAATACGTATGCCCCATGTTTCTGTTGATACTGAAGAAAGAGGGCTATCCACAATGACAGCTAAGGAACTGAAGTTTAAAGGAGACAAAAAAGGGAGGAAAAAATATCAAGATTTAGATAGAGCAAGGATGCTTCCAAATGAAATCACGGTCGGAGAACGGGTTATGGTTGATCAACCTATGCAACACAACGCGAAACAGGCAGCTGTTGCTGGAATGCAACCACAGAGAAATAGGAGATCTGCTTTGGAGATGCCATCTAGTTTCTCCGAGGACGAAACTGCAGAAACGAGCTCCTCGCTGAATTA 1550 0.3929 MEESGELHSEENKVVVEKNKKRRLKTPAQVTGLEKFYNEHKYPTEEMKLELAEELGLTEKQVSGWFCHRRLKDKRLLKDEACANVRQDRSSGVIQDHGSGLGQDSCGSTKHGDYKLLDPREVESRGLYGNDLLAADLTYEHRSRYTENISGRDDTSSESSSSLQDRSFPQGQDMYNMEPSTYLTPNRALPPLNPKSATNMGYKPSGYLKVKGEIDAITSVRKQIGKNYREDGPPLGVVFDPLPPGAFEYETDDPIQEPYYAANPALPSSPEISPVKRQPSLSSRYDSYNAKFSSQDSHMEGADLGSFHDSDFQDKKSHQQIKLRPNFQSHTNHLPGRNSSLDLYEDSIGEASVYNSDKNHRKITKNVIEGMRSDSASNHSDHYEGKADSLLHGHDTINPKNTQRSEYVKSKPSNSIRMPHVSVDTEERGLSTMTAKELKFKGDKKGRKKYQDLDRARMLPNEITVGERVMVDQPMQHNAKQAAVAGMQPQRNRRSALEMPSSFSEDETAETSSSLN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02895 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 515 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 152 180 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 478 516 - -
Bva12g02895 516 Gene3D - 14 83 - -
Bva12g02895 516 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Bva12g02895 516 SMART HOX_1 18 80 IPR001356 GO:0003677
Bva12g02895 516 MobiDBLite consensus disorder prediction 395 417 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 389 417 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 494 516 - -
Bva12g02895 516 CDD homeodomain 20 75 IPR001356 GO:0003677
Bva12g02895 516 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Bva12g02895 516 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Bva12g02895 516 MobiDBLite consensus disorder prediction 88 110 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 88 106 - -
Bva12g02895 516 MobiDBLite consensus disorder prediction 146 180 - -
Bva12g02895 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02895 Bva-Chr12 20825922 20831450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02895 3 516 Homeobox Transcription Factor Family AT4G03250 38.619 1.23e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva12g02895 Homeodomain 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02895 - - gmx:100803515 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02895 12 20825922 20831450 Bva12g02895 12 20825922 20831450 ECH