Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02888 ATGGCTTTCTTTAGAAACtattcaaatgaaatagtttCGCATGGTGTCATGGAAGAAAAAGGCCAAGGACAGAATGCAGATAGGATCCACAGATCACTAGGTAATGAATGTGATGATGCAACTTCCAGTGAGAAAGATATTGATATGAATATGGATGTCCAGTATCAGAGTGATGGTGAACCTGATAGTGCCAATGGACTGCAAAATGAGGCAACAATTGATGATGGAGTTGGGATGAAAGAATCTAGCTTGCAGGCTACTGAAAGGAAAACAGCTATGGTTGGAAGGTGGGGCTCGACTTTCTGGAAGGGCTGCCAGCCTATGCGTCCTCAGAATGGGTCAGAATCTGGGCAGGAATCTAAAAGTGGATCAGACTATAGAAATGCAGAAGGATCTGAAGATAATTCATCTGATGGAAGACGGGAAAGATTAGATTTAGAAGAGGATGATGAACAAAAGGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTTCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTATAGGGGAATTCAACAACCCACTGGATTGAATTCTTGGCCACAACGAATGTCTACAGGTGCCAGTAGCCGTGGGCGGAGGAATTCTAGGATttcagatgatgatgatgatgatgatgataatggtGATGGTGATGGTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCAGCCATAAGCAGTCGTACTGCAAACAAGGATAAAGATTGGGATGGTGGATattcagaagaagaagatgaaagtgATGAGGATATAGAAGTCTCAGATGAGGATGATTGTTACTATGCAAAGAAGCCTAAGGGGAGGCAACGTGGTAAGGTTGGTCATAGTGTAAAATCTTCTAGGGAACGCCCTAGTCGACAAAGAAGAGTTAAATCATCTTTTGAAGAAGATGAGTCAACAGCTGAGGATTCTGACAGTGAAAGCAATGAGGATTTTAAGAGTATGAAAAAGAGAGGTGTCCAGGTTCGAAAGAATAATGGGCGATCATCTGCTGCCACAAGTTTTTCTGGGCGAAACAATGAGGTTCGCACTTCTACTAGGACAGTTAGGAAGGTATCATATGTTGAAAGtgaagaaagtgaagaaattgatgagggaaaaaagaagaagtccCAAAAGGAGGAAATTGAGGAGGAGGATGGTGACTCCATTGAAAAGGTTCTTTGGCATCAACCCAAAGGCATGGCTGAAGAGGCTCAAAGGAATGGTAAACCATCAGAGCCTGTTCTGTTGAGCCACTTGTTTGATTCCGAACCTGATTGGAATGAGATGGAGTTCTTGATTAAATGGAAAGGCCAGTCACATTTACACTGTCAATGGAAATCATTTGCTGAGCTGCAAAATCTCAGTGGATTTAAGaaggttttaaattatacaaagaaaatgacagaGGACATCAGGTACAGGATGTCAATCTCAAGAGAAGagATTGAGGTTAATGATGTGAGTAAGGAGATGGACTTAGATCTAATCAAGCAAAACAGTCAGGTGGAAAGGGTAATTGCAGATAGAATCAATAGAGATAACTCTGGCAATGTCATTCCTGAATACCTGGTCAAATGGCAAGGACTATCCTATGCAGAAGCAACATGGGAGAAGGAtgttgatatttcttttgctcAACATGCTATTGATGAGTATAAGGCTCGGGAGGCTGCTATGTCAGTTCAGGGAAAGACGGTAGACCCCCAGCGCAAGAAGAGCAAAGCGAGTTTGAGGAAGCTCGATGAACAGCCTGAATGGTTGAAGGGTGGAAAGCTTCGTGATTATCAACTTGAGGgtttgaattttcttgttaACAGTTGGAGAAATGACACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTGGTGGTTGTCCCTTTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGatatgaatattattatatatgttggtACTCGTGCAAGTCGAGAGGTTTGCCAACagtatgaattttataatgacAAAAAGGTTGGCGGGCCTATAAAATTCAATGCATTGTTGACTACGTATGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTTATGGTTGATGAGGCCCATAGACTTAAAAATAGCGAGGCACAGTTGTACACAACACTTTCTGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTTTACAGAATAGTGTTGAGGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAACCTAAGTTCATTCAATGAAAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATTCTCCGAAGAGTTATCAAGGACGTAGAGAAGTCCTTGCCCCCCAAAATTGAGCGTATTCTAAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGCAACTTCCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTTAATATTGTGGTAGAACTGAAGAAGTGCTGCAATCACCCCTTCCTCTTTGAAAGTGCTGACCATGGTTACGGTGGTGACTCAGTAAGCGGTGACAGCAGTAAATTGGAGAGAATTGTGTTTAGCAGTGGGAAGCTAGTCATACTTGATAAACTGCTGGTCAGATTGCATGAGACTAAGCATCGTGTGCTTATTTTCTCTCAGATGGTTAGGATGTTGGATCTCCTGGCAGAGTATATGTCACTTAGAGGGTTTCAGTTCCAGAGGCTTGATGGCAGTACAAAAGCTGAGTTGCGGCAGCAGGCTATGGACCATTTTAATGCTCCTGGTAGTGATGATTTCTGCTTCCTCCTTTCAACACGAGCAGGAGGTCTTGGTATCAACCTAGCCACAGCAGACActgttataatatttgattcgGACTGGAATCCCCAAAACGACCTTCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTAAACATCTATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGAGCTAAGAAGAAAATGGTTCTTGACCATTTGgtgattcaaaaattaaatgcagaGGGTAGattggagaagaaagaagccaAAAAAGGAAGTTATTTTGACAAAAATGAGCTGTCGGCAATCCTAAGATTTGGAGCAGAGGAGCTTTttaaagaggagaaaaatgatgaagaaagcaagaaacGACTCTTAAGTATGGATATAGATGAGATACTTGAAAGAGCAGAAAAGGTTGAGGAGAAGGAACCTGAGGGAGAACAAGCGCATGAGTTGTTGAGTGCCTTTAAGGTTGCTAATTTCACTAATGGTGAGGATGATGGAAGTTTTTGGAGTCGTTGGATAAAACCTGAAGCGGTGGCCCAAGCTGAAGAGGCCCTTGCTCCTCGTGCTGCAAGGAACATTAAAAGCTATGCAGAGGCTAATCAATCTGGAAGAGCAGAGGCTAATCAATCAGGAAGAAgtagtaaaaggaaaaagaaagaacctgAACCTCTGGAGAGAACTCAGAAACGCCGCAAAGTAGAGTATTCGGTTCCTGCAGCACCTATGATTGAGGGAGCATCTGCTCAAGTGAGAAGTTGGTCATATGGGAATTTGTCCAAAAGAGATGCACTGCGTTTTTCTCGTGCAGCTATGAAGTTTGGAAACGAGAGCCAAATCAACTTAATAGCTGCTGAGGTGGGTGGTGCAGTCGGAGCAGCTACTTCCGATGCACAAATTGAACTCTTCAATGCCTTAATTGATGGCTGTAGAGAAGCAGTGGACTTTGGAAGTATGGATCCAAAGGGGCCTTTGTTGGATTTCTTTGGTGTCCCAGTAAAGGCAAATGATCTACTAAATCGTGTTCAAGAACTACAACTCTTGGCAAAACGCATAAGTCGATATGAAGATCCCATTGGACAATTCCGTGTTTTAACATATCTCAAACCTGCCAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATATATTACCATGGGTTTGGCAATTGGGAAAAGATAAGATTGGATGAAAGTCTTGGCCTTACAAAGAAGATTGCTCCGGTAGAACTTCAACACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTGAGAGACCGTGCTAATTCTCTTCTGGAACAAGAACTCGCTGTTCTTGGTGGCAAAAGCCTCAATAGCAAAGTTGGACGTAAGCCTTCCAAGAAACAGAGAGAACAGCTTATGAACATGCCATTGTCTCGTGGACAGGAAAAGAAGGGAATACTAGGTTCTCCTAAAGTTAATGCTCGCATGAGAAAGGATAAACTTCTGAAACCCCAAAGAGTTGAACCTATAGTGAAAGAAGAGGGTGAAATGTCGGACAATGATGCAGTCTATGAGCAGTTCAAGGAGGTAAAGTGGATGGAATGGTGCCAAGATGTGATGCTTGAACAAATGAAGACATTGAAACGTCTTCATAGGTTGCAAACAACCAGCGCTAATCTCCCAAAGGAAAAGGTGCTTTCAAAAATCCGCAACTATTTACAGCTTCTTGGGCGGAGGATATATCAAATCGTGTTAGAATATAATGATGACCCTTACAAGCAAGATAGGATGACTACGCGATTGTGGAACTATGTCTCTACCTTCTCACATCTTTCAGGGGAAAGACTACGTCAAATTTATTCCAAACTAAAACAAGAGCAAGAAGATGAGATGGGAGTTGGCCCCTCTTATGTCAATGGGACAGTATCTGGTCCATTTGGCAGAAATGGTAATCCTAAACCTTTCCCTCGCCGCATGGAGCAGCAACGAGGATACAAAAATGTGACTACCAACCAAACGCCAGCACCATTTAATCATACAGGAAAATCCGAGGCATGGAAACGGAGAAGAAGGGCTGACAGTGATGGTAATTTCCAAGGTGCCCTTTCACCTCAAAGGACCATGAACAATGGAGTCCGAATATCTGATCCCAACTCATTGGGGATTCTTGGGGCCGGACCATCTGACAAGCGTTTTGTTAGTGAGAAACCACCTTATAGGACGCGACCTAGTGGGTTTCCTAACAGACAGGGTTTCAATTCAGACATCAAGTA 5291 0.4022 MAFFRNYSNEIVSHGVMEEKGQGQNADRIHRSLGNECDDATSSEKDIDMNMDVQYQSDGEPDSANGLQNEATIDDGVGMKESSLQATERKTAMVGRWGSTFWKGCQPMRPQNGSESGQESKSGSDYRNAEGSEDNSSDGRRERLDLEEDDEQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGIQQPTGLNSWPQRMSTGASSRGRRNSRISDDDDDDDDNGDGDGDYEEEDEADEDDPDDADFEPAISSRTANKDKDWDGGYSEEEDESDEDIEVSDEDDCYYAKKPKGRQRGKVGHSVKSSRERPSRQRRVKSSFEEDESTAEDSDSESNEDFKSMKKRGVQVRKNNGRSSAATSFSGRNNEVRTSTRTVRKVSYVESEESEEIDEGKKKKSQKEEIEEEDGDSIEKVLWHQPKGMAEEAQRNGKPSEPVLLSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKMTEDIRYRMSISREEIEVNDVSKEMDLDLIKQNSQVERVIADRINRDNSGNVIPEYLVKWQGLSYAEATWEKDVDISFAQHAIDEYKAREAAMSVQGKTVDPQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKVGGPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSGDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDLLAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEEKNDEESKKRLLSMDIDEILERAEKVEEKEPEGEQAHELLSAFKVANFTNGEDDGSFWSRWIKPEAVAQAEEALAPRAARNIKSYAEANQSGRAEANQSGRSSKRKKKEPEPLERTQKRRKVEYSVPAAPMIEGASAQVRSWSYGNLSKRDALRFSRAAMKFGNESQINLIAAEVGGAVGAATSDAQIELFNALIDGCREAVDFGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIGQFRVLTYLKPANWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDESLGLTKKIAPVELQHHETFLPRAPNLRDRANSLLEQELAVLGGKSLNSKVGRKPSKKQREQLMNMPLSRGQEKKGILGSPKVNARMRKDKLLKPQRVEPIVKEEGEMSDNDAVYEQFKEVKWMEWCQDVMLEQMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIYQIVLEYNDDPYKQDRMTTRLWNYVSTFSHLSGERLRQIYSKLKQEQEDEMGVGPSYVNGTVSGPFGRNGNPKPFPRRMEQQRGYKNVTTNQTPAPFNHTGKSEAWKRRRRADSDGNFQGALSPQRTMNNGVRISDPNSLGILGAGPSDKRFVSEKPPYRTRPSGFPNRQGFNSDIK 1763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02888 1763 Coils Coil 1131 1151 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 355 382 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 1704 1722 - -
Bva12g02888 1763 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Bva12g02888 1763 SMART ultradead3 614 813 IPR014001 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 187 214 - -
Bva12g02888 1763 Gene3D - 1352 1458 - -
Bva12g02888 1763 Gene3D - 609 848 IPR038718 -
Bva12g02888 1763 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1698 - -
Bva12g02888 1763 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Bva12g02888 1763 CDD CD2_tandem 524 580 - -
Bva12g02888 1763 Coils Coil 1078 1098 - -
Bva12g02888 1763 CDD SF2_C_SNF 924 1059 - -
Bva12g02888 1763 SMART helicmild6 964 1048 IPR001650 -
Bva12g02888 1763 SMART chromo_7 524 583 IPR000953 -
Bva12g02888 1763 SMART chromo_7 411 494 IPR000953 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 56 70 - -
Bva12g02888 1763 Gene3D - 849 1079 IPR027417 -
Bva12g02888 1763 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Bva12g02888 1763 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1698 - -
Bva12g02888 1763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1123 IPR027417 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 1637 1763 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 105 125 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 383 413 - -
Bva12g02888 1763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Bva12g02888 1763 Gene3D - 398 526 - -
Bva12g02888 1763 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 1208 1244 - -
Bva12g02888 1763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 270 287 - -
Bva12g02888 1763 Pfam Domain of unknown function (DUF4208) 1536 1628 IPR025260 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 222 251 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 1669 1685 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 1221 1244 - -
Bva12g02888 1763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Bva12g02888 1763 Gene3D - 528 580 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 126 169 - -
Bva12g02888 1763 CDD CD1_tandem 411 491 - -
Bva12g02888 1763 SMART DUF4208_2 1524 1629 IPR025260 -
Bva12g02888 1763 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 306 328 - -
Bva12g02888 1763 MobiDBLite consensus disorder prediction 54 413 - -
Bva12g02888 1763 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Bva12g02888 1763 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02888 Bva-Chr12 20771413 20787207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02888 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 26.680 4.87e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva12g02888 SNF2_N 2.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02888 K11367 - gmx:100808039 2781.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02888 12 20771413 20787207 Bva12g02888 12 20771413 20787207 ECH