Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02885 ATGGCCATTTCTTGTGCTTCTTTCAGcttcttttcattctcttggcttattttcttctgtctCTTTACTGGTTCTGATTCTGTGTCTTCATTTCCTTTGTCTCTGAGAAAGCAAGCTTCAATCTTGGTTTCTCttaaagaagattttgaagcTGTAAATGCTTCTTTGAGCTGCTGGAATATGAGTAATTACTTGTCACTTTGCACTTGGTATGGCATAAAATGTGACCTTAAGAACAGAACTGTGGTGCTGCTTGACATGTCCAATTTGAACATTTCTGGGCCACTCTCTGCTTCCATCACAGAACTCCATGGCCTGGTTTATCTTTCGGTGGCCGGAAATGGGTTTTCCGGCGAGTTTCCAAGAGATGTTCACAAGCTGGGGAGGCTGAGATTCCTCAACATGTCCAACAACATGTTTGGTGGGAATCTGAGGTGGGAATTCTCTAAGATGAAAGAGCTTGAAGTGCTTGATGCTTATAACAACAACTTCAATGGGTCACTTCCTCCTGGGGTCACTGAGCTCCCCAAGCTCAAGTACTTGAATTTTGGCGGGAATTACTTTTCTGGGAAAATCCCTCCAAGCTATGGGAAAATGTTGCAGCTCAGGTATCTTTCTGTTGCAGGAAATGACTTGAATGGAATCATACCCAGTGAGCTTGGTAACTTGAAAAATCTGACCCAGCTTTATCTGGGATATTACAATCAATTTGATGGCGGAATCCCAAGTGATTTGGGGAAACTTGTAAATTTGTTTCATCTGGACCTTGCAAACTGTGGGTTAAAAGGTCAAATTCCAGCAGAGTTGGGGAACCTGATTAAACTAGACACACTTTTCTTGCAAACCAATCAACTTTCTGGTTCAATTCCTCCCCATTTGGGGAATTTAACAAGCTTGAAATCTCTTGACCTTTCAAACAATGAGCTTACTGGGGATATTCCAATTGAGTTCTCAGGCCTCCATGAGCTTACCCTTTTGAATTTGTTCATCAACAAGCTACATGGGGAAATTCCTGCTTTCATTGCTGAGTTGCCTAATCTGCAAGTTCTGAAGCTTTGGCACAACAACTTCACTGGGTCAATCCCTTCAAAGCTTGGCCAGAATGGGAAGTTGACTGAGCTTGACTTGTCAACAAACAAACTCACTGGTTTAGTCCCTAAATCTCTGTGCCTTGGGAAGAGGCTCAAGATCTTGATCTTGCTCAACAATTTTCTGTTTGGATCTTTGCCTGCTGAGCTTGGCCAATGCTACACATTAACAAGAGTTCGCCTTGGACAAAACTACTTCACAGGATCAATACCAAATGGGGTTCTTTATCTGCCTGAGCTTGCACTTTTGGAGTTGCAGAACAATTATCTCAGTGGTGGCCTTCCTCAACAAACAAGCTATTCACCATCAAAACTTGGACAGTTGAATCTCTCAAACAATCGCCTTTCAGGGTCTCTACCAGCATCTATAGGGAATTTCCCTAGCCTGCAAATCCTTCTGCTGAGTGGAAATAGATTCTCAGGAGAAATTCCACCTGATATAGGGAGGTTGAAGAATATCCTCAAACTTGATATCAGAGGGAACAATTTTTCAGGTAACATTCCTGCTGAGATGGGAAACTGTGTCTTGCTCACCTATTTAGATTTAAGCCAAAACCAGTTATCAGGCCCTATTCCAATTCAACTTTCTCAAATTcacatattaaattatcttaatgtCTCATGGAACCACTTAAACCAAAGCATTCCCAGGGAACTTGGTACCATCAAGGGCTTAACTTCTGCAGACTTTTCTCACAATAACTTATCTGGTTCAATTCCTCAGAATGGTCAATTCTCAGTCTTTAATTCCACTTCCTATGTGGGTAACCTTCTGCTCTGTGGATATGACTTGAATCCATGCAAACATTCATCAAACTGGCTCTTAGAACCTCACGGCGAAAAGGGCACAAAATCAGGATTTTCTGGGAAGTTCAAGCTTGTTTTTGCACTGGCACTCTTAGCGTGTTCATTGGTGTTTGCCACATTGGCCACCATCAAGAGCAGAAAGGTGAGAAAACACTCAAATTCATGGAAGCTCACAGCATTCCAGAAGCTAGATTATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAGGCAGTGTGATAGGAAGAGGAGGAGCTGGGGTTGTTTACAAGGGAACCATGCCAAATGGAGAGCAAGTTGCAGTGAAGAAACTCTTGCGAATCAGCAAAGGCTCTTCCCATGACAATGGCTTCTCTGCAGAAATTAAGACACTGGGTAGAATTAGACACAGATACATTGTGAGGTTGCTGGCATTTTGCTGCAATAGAGAAACCAATCTGCTTGTTTATGAGTACATGCCAAATGGGAGCTTGGGTGAAGTCTTGCATGGAAAAAGAGGTGAGTTTCTCAAGTGGGATACAAGGCTCAAAATAGCCATTGAAGCTGCAAAAGGGCTTCGTTATTTGCACCATGATTGCTCTCCTCTGATTATCCACAGGGATGTTAAGtcaaataacatattattgAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGCAAGACACTGGAACTTCAGAGTGCATGTCTTCCATTGCAGGCTCTTATGGCTACATAGCCCCAGAGTATGCATACACATTAAAAGTTGATGAGAAGagtgatgtttatagttttggagttGTACTTTTAGAACTCATAACAGGGCGAAGGCCGGTTGGTGATTTCGGAGAAGAAGGGCTAGACATTGTCCAATGGACTAAGAATCAGACAAGTTGGAGCCAAGAAAAAGTGATGAAGATCTTTGATGAGAGGCTACAAAATGTTCCTTTAGATGAAGCAAAGCAGGTATTCTTTGTTGCCATGTTATGTGTTCAGGAAAACAGCGTGGAGAGACCAACCATGAGAGAAGTGGTTCAAATGCTTATACAAGCAAAGCATCCTGACCCATTTCACATTTA 2969 0.4102 MAISCASFSFFSFSWLIFFCLFTGSDSVSSFPLSLRKQASILVSLKEDFEAVNASLSCWNMSNYLSLCTWYGIKCDLKNRTVVLLDMSNLNISGPLSASITELHGLVYLSVAGNGFSGEFPRDVHKLGRLRFLNMSNNMFGGNLRWEFSKMKELEVLDAYNNNFNGSLPPGVTELPKLKYLNFGGNYFSGKIPPSYGKMLQLRYLSVAGNDLNGIIPSELGNLKNLTQLYLGYYNQFDGGIPSDLGKLVNLFHLDLANCGLKGQIPAELGNLIKLDTLFLQTNQLSGSIPPHLGNLTSLKSLDLSNNELTGDIPIEFSGLHELTLLNLFINKLHGEIPAFIAELPNLQVLKLWHNNFTGSIPSKLGQNGKLTELDLSTNKLTGLVPKSLCLGKRLKILILLNNFLFGSLPAELGQCYTLTRVRLGQNYFTGSIPNGVLYLPELALLELQNNYLSGGLPQQTSYSPSKLGQLNLSNNRLSGSLPASIGNFPSLQILLLSGNRFSGEIPPDIGRLKNILKLDIRGNNFSGNIPAEMGNCVLLTYLDLSQNQLSGPIPIQLSQIHILNYLNVSWNHLNQSIPRELGTIKGLTSADFSHNNLSGSIPQNGQFSVFNSTSYVGNLLLCGYDLNPCKHSSNWLLEPHGEKGTKSGFSGKFKLVFALALLACSLVFATLATIKSRKVRKHSNSWKLTAFQKLDYGSEDIIGCIKEGSVIGRGGAGVVYKGTMPNGEQVAVKKLLRISKGSSHDNGFSAEIKTLGRIRHRYIVRLLAFCCNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLRYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFGEEGLDIVQWTKNQTSWSQEKVMKIFDERLQNVPLDEAKQVFFVAMLCVQENSVERPTMREVVQMLIQAKHPDPFHI 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02885 989 Pfam Protein tyrosine and serine/threonine kinase 707 978 IPR001245 GO:0004672|GO:0006468
Bva12g02885 989 Gene3D Ribonuclease Inhibitor 147 238 IPR032675 -
Bva12g02885 989 Gene3D Ribonuclease Inhibitor 239 341 IPR032675 -
Bva12g02885 989 SUPERFAMILY Protein kinase-like (PK-like) 701 982 IPR011009 -
Bva12g02885 989 Gene3D Phosphorylase Kinase; domain 1 677 783 - -
Bva12g02885 989 SUPERFAMILY RNI-like 85 406 - -
Bva12g02885 989 ProSiteProfiles Protein kinase domain profile. 706 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02885 989 SMART serkin_6 706 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02885 989 SMART LRR_typ_2 440 464 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 489 513 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 248 272 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 369 391 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 151 175 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 344 368 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 199 223 IPR003591 -
Bva12g02885 989 SMART LRR_typ_2 296 319 IPR003591 -
Bva12g02885 989 Gene3D Transferase(Phosphotransferase) domain 1 784 985 - -
Bva12g02885 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Bva12g02885 989 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 14 985 - -
Bva12g02885 989 ProSiteProfiles Leucine-rich repeat profile. 370 391 IPR001611 GO:0005515
Bva12g02885 989 Gene3D Ribonuclease Inhibitor 37 146 IPR032675 -
Bva12g02885 989 SUPERFAMILY L domain-like 323 633 - -
Bva12g02885 989 Gene3D Ribonuclease Inhibitor 342 636 IPR032675 -
Bva12g02885 989 PANTHER UNNAMED PRODUCT 14 985 - -
Bva12g02885 989 Pfam Leucine rich repeat 441 502 IPR001611 GO:0005515
Bva12g02885 989 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02885 Bva-Chr12 20763035 20767149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02885 22 980 Receptor kinase-like Gene Family AT5G65700 58.524 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva12g02885 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02885 - - gmx:100816158 1546.56