Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02883 ATGAGACAGCTTGACCATGGTGTAGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTTAACAGAGGTTCTCTAAATTTGAGTGAGGTTCAGTTTGTTGTTCTCGATGAGGCTGATCAGATGCTTCAAGTGGGCTTTCAAGATGATGTTGAGAAAATCTTGGAGAGGTTGCCTCCCAAACGTCAGACTCTGATGTTCTCTGCAACAATGCCATCTTGGATAAGGCAGCTCACCCGCAATTACCTAAATAATCCGCTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTATTTTCAATTGCATCCGACATGCACACAAAAGCAGGGATTATTGGGCCTTTAGTAACAGAACATGCGAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATGCCATGGCAAGAACCCTTAGATGTGAGGCCTTGCATGGTGATATTTCACAAAATCAGAGGGAAAGAACTCTGGCTGGCTTCAGAAATGGTGAATTCAATGTCTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGATCTTGTAATACATTTTGATCTAGCCAATTCTTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGGAAGAAAGGAACTGCTATTCTTATTTATACACAAGATCAACACAGGACTGTTAGGCTTATTGAGCGGGATGTAGGTTGCAGATTTACAGAGCTCCCTAGAATTGCTGTTGATAGTGGATCAGTGGATATGTTTGGTGGAAGCATGGGTGGTGGTCGGTTTGGCTCATTTGGTGGCTCGAGGGACCGTCGACCTGGTTTTGGCCAGACCGGTGGCTTTGGCCGCTCTGGTTATGGTAATTCTGGTGACATGGGAAGGTATGGTGGATCATACTCTGGTGAGTTTGGTTCTTCCGGTAGCTCTAGAGGTGGATTTGGCATGAACCGCCCTGGAAATACCAGTGGATCTGGATTTAGTCGACCACGTGGTTTTGGTAATTCAGATCGTTCTGGTGGTTTTGGAGATTTTGGCTCAAACCAATCTAGCAGTTTTGGTAACAGAAGTTCAGGACAAAGCAGTGCCTTTGGTAGTAATCGTTTTGGCTCTTTTGGGGATGACAAGAGTAACGATGGTGGAAAGCCATTCTA 1196 0.4398 MRQLDHGVDIAVGTPGRIIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQDDVEKILERLPPKRQTLMFSATMPSWIRQLTRNYLNNPLTIDLVGDSDQKLADGISLFSIASDMHTKAGIIGPLVTEHAKGGKCIVFTQTKRDADRLSYAMARTLRCEALHGDISQNQRERTLAGFRNGEFNVLVATDVASRGLDIPNVDLVIHFDLANSSEIFVHRSGRTGRAGKKGTAILIYTQDQHRTVRLIERDVGCRFTELPRIAVDSGSVDMFGGSMGGGRFGSFGGSRDRRPGFGQTGGFGRSGYGNSGDMGRYGGSYSGEFGSSGSSRGGFGMNRPGNTSGSGFSRPRGFGNSDRSGGFGDFGSNQSSSFGNRSSGQSSAFGSNRFGSFGDDKSNDGGKPF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02883 398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 90 IPR014001 -
Bva12g02883 398 MobiDBLite consensus disorder prediction 355 387 - -
Bva12g02883 398 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 1 310 - -
Bva12g02883 398 MobiDBLite consensus disorder prediction 321 346 - -
Bva12g02883 398 CDD SF2_C_DEAD 126 233 - -
Bva12g02883 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 245 IPR027417 -
Bva12g02883 398 Gene3D - 1 94 IPR027417 -
Bva12g02883 398 SMART helicmild6 144 224 IPR001650 -
Bva12g02883 398 MobiDBLite consensus disorder prediction 321 398 - -
Bva12g02883 398 Gene3D - 110 263 IPR027417 -
Bva12g02883 398 CDD DEADc 1 91 - -
Bva12g02883 398 Pfam Helicase conserved C-terminal domain 123 224 IPR001650 -
Bva12g02883 398 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 310 - -
Bva12g02883 398 MobiDBLite consensus disorder prediction 279 302 - -
Bva12g02883 398 Pfam DEAD/DEAH box helicase 2 77 IPR011545 GO:0003676|GO:0005524
Bva12g02883 398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 119 263 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02883 Bva-Chr12 20750014 20753953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02883 1 256 Eukaryotic Initiation Factors Gene Family AT3G19760 35.115 3.93e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02883 - - zju:107416831 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00930 12 9978310 9982245 Bva12g02883 12 20750014 20753953 BWGD