Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02878 ATGAGGCCTTCTACGCCGGGACTTAGTCAACCGGCTCAAGAAGGGgagaaaaaatgtttgaattcTGAACTGTGGCATGCATGTGCTGGCCCTCTGGTGTCTCTACCTCCTATTGGAAGTCGTGTTGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAAGGAAGTGGATGCACATATTCCCAATTATCCTAACCTGCCACCACAGCTTATTTGTCAACTTCACAATGTGACGATGCATGCAGATGCAGAAACAGATGAAGTATGTGCTCAGATGACCCTGCAACCTCTAAGTCCGCAAGAGCAAAAGGATGTCTACCTACTCCCTGCAGAACTGGGTACTCCTAGCAAACAACCTACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACACATGGAGGATTCTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACACACAGCAGCCACCCGCACAAGAACTAATTGCTAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTAACTACAGGGTGGAGTGTCTTTGTTAGTGCTAGGAGACTTGTTGCTGGTGATTCTGTCCTGTTTATCTGGAATGAAAAAAATCAGTTTCTCTTGGGCATCCGGAGGGCAAATCGTCCCCAGACTGCCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTATAACCCCAGGGCTAGCCCGTCAGAATTTGTTATTCCCTTAGCCAGGTATGTTAAAGCTGTATGCCATACCCGTGTTTCTGTGGGCATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGCGTCCGTCGATACATGGGTACTATAACAAGCATTAGTGATTTAGATCCTGTTCGCTGGCGAAATTCACACTGGCGTTCTGTGAAGGTTGGTTGGGATGAATCTACTGCTGGTGAGAGGCAGCCAAGAATTTCTTTATGGGAGATTGAGCCATTGACCACATTCCCCATGTATCCATCCCCATTCTCTCTGAGGTTGAATCGCCCTTGGCCATCAGGATTACCATCTTTCCCTGGTCTCAAGTATGGTGACATGAGCATTAGTTCTCCGCTCATGTGGCTCCAAGGTGGGATTGGAGATCAAGGGATGCAATCTATAAACTTCCAGGGACTTGGAGTTACACCATGGATGCAGCCCAGACTGGATGCTTCTATACCAGGTCTCCAGCCAGAGATACATCAAGCAATGGCTGTTGCTGCACTCCAGGAAATGAGGACAATGGATCCGTCAAGGTCATCTCAATCTCTGCTGCAGTTCCATCAGCCTTCAAATGATCCCAGTGTTCCTGCATCTGTAATCCAGAGGCAAGTGTTACAGCAGTCCCAGCCTCAAACTATTCTTCTACagaattttcaagaaaaccaGGTGCCTGCTCAGCCTCAACTTCTGCAGCACCAGGTGCAACGATACCACCCATATAGTGATCAGCGGCAACATCAACAACATCAGCATTCACAGCAACTTAACAATTTTCCTGTTCAGCAGCAGATGCCAAATGTCATCTCACCCTTGTCTAATTTTGTGTCAGCTACTCAGTCTCAATCTCCATCACCTCAGACTATAGGTTCACATTGCCAGCAGCAGAGTTTTCATGAACCTTCCCGGAACAGTATTTCCAGCTCTGATGTTTCCCCTATCCATAGTCTGTTAGGATCATTTTCCCATGATGGAACATCCCAGTTACTTAACGAGAATGAATCCAATGGCATCATCTCTTCTGCTGCCTTACTACCCAAGCGAGTATCTGGTGAACCTCAGCTTCCATCTGCTGCAGCTCAGTGTGTAGTGCCCCAGGTGGAACAATTAGGAACAGCACAGCCAAATGTGTCTGAACTTGCTGCTTTACCTCCATTTGCTGGGAGAGATTATTCTGCATACCAAGGTGCTACTGATCCTCAGAACAATCTTTTGTTTGGGGTTAATATTGACCCTTCTCTTATGCTACAAAATGGCATTCCAAACCTGAGAAATGTTGGCAATGAGAATGATTCTTTGTCGGtgccattttcttcaaattttgctGGTGCTACAGCCTCTGATTTTCCACTAAGTTCGGACATGACAACTTCAAGTTGTGTGGATGAATCAGGGTTCTTGCAGTCTTCCGAAAATATAGACCAAGCAAATACACAAACCAGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGATCACTGGACATTTCTAAGTTCAGCAGCTATGATGAACTGCGCAGTGAGCTCGCACGCTTGTTCGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAGAACGATGTTCTTCTCCTTGGCGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATACTGTCTCCTCTTGAAGTGCAACAATTGGGCAAAGAAGGTCTTCATCCTGCTACTTATGCACCAAGTCACAAGTTTTCTACTACTAGCAACACCTGTGATAACTATGTTAGTCGATA 2636 0.4541 MRPSTPGLSQPAQEGEKKCLNSELWHACAGPLVSLPPIGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVCAQMTLQPLSPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSARRLVAGDSVLFIWNEKNQFLLGIRRANRPQTAMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLARYVKAVCHTRVSVGMRFRMLFETEESSVRRYMGTITSISDLDPVRWRNSHWRSVKVGWDESTAGERQPRISLWEIEPLTTFPMYPSPFSLRLNRPWPSGLPSFPGLKYGDMSISSPLMWLQGGIGDQGMQSINFQGLGVTPWMQPRLDASIPGLQPEIHQAMAVAALQEMRTMDPSRSSQSLLQFHQPSNDPSVPASVIQRQVLQQSQPQTILLQNFQENQVPAQPQLLQHQVQRYHPYSDQRQHQQHQHSQQLNNFPVQQQMPNVISPLSNFVSATQSQSPSPQTIGSHCQQQSFHEPSRNSISSSDVSPIHSLLGSFSHDGTSQLLNENESNGIISSAALLPKRVSGEPQLPSAAAQCVVPQVEQLGTAQPNVSELAALPPFAGRDYSAYQGATDPQNNLLFGVNIDPSLMLQNGIPNLRNVGNENDSLSVPFSSNFAGATASDFPLSSDMTTSSCVDESGFLQSSENIDQANTQTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQLGKEGLHPATYAPSHKFSTTSNTCDNYVSR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02878 878 Gene3D - 126 229 IPR015300 -
Bva12g02878 878 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva12g02878 878 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Bva12g02878 878 ProSiteProfiles PB1 domain profile. 761 845 IPR000270 GO:0005515
Bva12g02878 878 SUPERFAMILY CAD & PB1 domains 755 835 - -
Bva12g02878 878 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Bva12g02878 878 Gene3D - 292 364 - -
Bva12g02878 878 Gene3D - 756 850 - -
Bva12g02878 878 MobiDBLite consensus disorder prediction 453 477 - -
Bva12g02878 878 CDD B3_DNA 127 228 IPR003340 GO:0003677
Bva12g02878 878 Pfam AUX/IAA family 751 845 IPR033389 -
Bva12g02878 878 MobiDBLite consensus disorder prediction 556 591 - -
Bva12g02878 878 MobiDBLite consensus disorder prediction 454 477 - -
Bva12g02878 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 867 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva12g02878 878 SMART B3_2 128 230 IPR003340 GO:0003677
Bva12g02878 878 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Bva12g02878 878 PANTHER AUXIN RESPONSE FACTOR 6 1 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02878 Bva-Chr12 20730750 20736981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02878 1 467 B3 DNA Binding Superfamily AT1G30330 84.110 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva12g02878 AUX_IAA 2.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02878 - - gmx:100810798 1459.89