Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02871 ATGAATAGTGGTGTTCCTGATTGGAATTTTGAGAATGATACTTGCATCGCCAATCAAAAGAGGCTCATTGGGCCGGACCAAGAACTAGTAGAACTTTTATGGCAAAACGGGCAGAAAAATACTCAACCAACATTAAGGACAGGTGCATCATATGGAAACTCAAGTAATTTGATTCAAGAAGATGAGACAGTCTCATGGATGCAATACCCACTTGATGATCCATTGGAACAAGAATTCTGCTCTAATTTTCTAACAGAGCTGCCAACCTGTGAAGCTCACTCTGATAAGCCAATCAAGCAATTTGAAGAAGGAAAGTTTGCCAAATTTGGTGCCTTTAGTACACCCCATGTGAATACAAGTTCACAACCACCTAATACAAAACCTTCCTTTGTTCAGGAATTCTCGGGAAATCCCATGCCTCCTGCTCCAAGATTTCATTTACCTGATTCATCTCAGAAAAACCTTGAATCAGGTGGATCACGAAAAGTTCACaaattttcccatttttcGGCACTTCCCAAGGTTATTTCTGCATCTTCTAATGCACAATTTGGAGAGAAAGGTACTAATAATTTGTACCAAAGTGAAGCTAAAGAGGGCTCAGTGATGACAGTTGGCTCAAGTCACTGTGGCAGCAATCTAATCCATCAAGACCCAGATGTGAGCAGGGCATCAAGCAATGGTGTTTGGACTACTGCTTTATCCTCTGAGCCTGAACCCTTCAGGGATGATGTGCACAGAACAATTGCTCGGAGTGATAAAGGGAAATCAGAGACACTTGAACCAACGGTTACTTCATCTTCTGGTGGTTCAGGCAGTAGTCTTGGAAGAACTGGTTCCCAGTCTACGAGGGTCCATGgccagaaaaggaaagaaagagatgcaGAAGAATCAGAGGAACAAAGTGAGGCCACAGAACTCAAATCAGCAGCTGGAAACAAGTCATCTCAGCGGACAGGGTCATCCCGAAGGAATCGTGCAGCCGAAGTGCATAATCTCTCAGAAAGGAAACGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAACAACTCATACCTCACAGCAATAAGACGGACAAAGCATCAATGCTGGATGAGGCAATAGAATACTTGAAATCACTTCAGTTACAACTTCAGGTTATGTGGATGGGAACTAGCATGACGCCGGTGATGTTTCCCGGAATTCAGCATTACATGTCACAGATGAGTATGGGAATGGCTCCACCTTCTTTGGCTCCTATTCAAAATATGATGCATTTACCAAGAGTGCCACTTGATCAGTCCATAAGTGTGGCTCAGACACCAAACCAGACTGTGATGTCACAAAATCCTGTTATGGGTCCCTTTAATTACCAAAATCAGATGCAAAATCCTGCTCTTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAGTGCCTCTCAGCCAATGAATGTATTCAGATATGGCCCCCAGGCAGTACAACACGGTCAAGCAATGATTCCACCCAGCAATAGTAATGAACCCCTGAGTGGATCAGCTAATGCTGTAAGTGGCAAGATGGGTGCTTCCAGCTTGAATAACAGCAATACCTG 1586 0.4256 MNSGVPDWNFENDTCIANQKRLIGPDQELVELLWQNGQKNTQPTLRTGASYGNSSNLIQEDETVSWMQYPLDDPLEQEFCSNFLTELPTCEAHSDKPIKQFEEGKFAKFGAFSTPHVNTSSQPPNTKPSFVQEFSGNPMPPAPRFHLPDSSQKNLESGGSRKVHKFSHFSALPKVISASSNAQFGEKGTNNLYQSEAKEGSVMTVGSSHCGSNLIHQDPDVSRASSNGVWTTALSSEPEPFRDDVHRTIARSDKGKSETLEPTVTSSSGGSGSSLGRTGSQSTRVHGQKRKERDAEESEEQSEATELKSAAGNKSSQRTGSSRRNRAAEVHNLSERKRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGTSMTPVMFPGIQHYMSQMSMGMAPPSLAPIQNMMHLPRVPLDQSISVAQTPNQTVMSQNPVMGPFNYQNQMQNPALSEQYARYMGYHLMQSASQPMNVFRYGPQAVQHGQAMIPPSNSNEPLSGSANAVSGKMGASSLNNSNT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02871 528 Pfam Helix-loop-helix DNA-binding domain 330 376 IPR011598 GO:0046983
Bva12g02871 528 MobiDBLite consensus disorder prediction 115 133 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 496 528 - -
Bva12g02871 528 SMART finulus 332 381 IPR011598 GO:0046983
Bva12g02871 528 MobiDBLite consensus disorder prediction 324 341 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 259 283 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 115 158 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 305 323 - -
Bva12g02871 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Bva12g02871 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 390 IPR036638 GO:0046983
Bva12g02871 528 MobiDBLite consensus disorder prediction 239 258 - -
Bva12g02871 528 Gene3D - 321 382 IPR036638 GO:0046983
Bva12g02871 528 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 506 IPR031066 -
Bva12g02871 528 CDD bHLH_AtPIF_like 326 389 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 233 341 - -
Bva12g02871 528 MobiDBLite consensus disorder prediction 285 304 - -
Bva12g02871 528 PANTHER TRANSCRIPTION FACTOR PIF5 5 506 - -
Bva12g02871 528 Coils Coil 288 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02871 Bva-Chr12 20676992 20682437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02871 8 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.870 1.49e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g02871 HLH 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02871 K16189 - gmx:100800166 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00903 12 9834608 9838416 Bva12g02871 12 20676992 20682437 BWGD
Bva12g00924 12 9934530 9939805 Bva12g02871 12 20676992 20682437 BWGD