Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02869 ATGGCTAGGCGTCCCGTGGGTAGAGAAAGGAGCGAGACAAGGGTCACAAACCGAAAACAGAAGAAACCAAGAATTACAGAAAAAGAAGACGAAGAAGAGAGttcaatttctcctttcttgaCCAACATTGAAGTGCTTCAGTGCTTCATTTGTTATGAACTTTTAACTTCTCCTGTTTTTCAATGCAAGAACGGGCATTCAGCTTGCTCTTCCTGCTGCTCCAAGGTGAACAAGAAGTGCCCTGTGTGCTCAAGTTCTATCGGTGACATGCGAAACCGGGCCATCGAAGACGTGTTGGAATCTCTCATGGTGCCATGCCCCAATGCAAAATATGGTTGCAAGGGGATGGTTAACTACAATAAGAAGAACGAGCATCGAAAATCCTGCATGCATGCACCATGTTCATGCCCATATTCAGAGTGTCGCTTCGTCTCCTCTTCCGACGAGTTATCCCTCCACTTCAGGCGCAAACACGAGAGCTCTGCTATGAGTTTTACATATGAAGAAAAGTTCAAGTTCTCCTTAGTCGTCACGGAGAAACGAGTTGTTCTTCAAGAAAAGGATGGTGATCTTTTTGTTCTCAACAATTCTAGTGTTGTGAATGTGGGAAATCTACTAAGTGTTAGTCGAATTGCCCCACAGTCATCTAAGTTTGCATGCAATTATTGGTTGTTCTGCTATTCTGACAGGTCTAAAAGGAGCTCTCTAAAGTTTGATTCTATTACTGATAACTGTCAAGGGCGCCACCTTATCCATAGGCCTTCAAGGGGGTCTCTTTTAGTTCCAAGTGCATTTTCAAGATTTCAATATATCGAGTTGCGTATTCGAACAGGGAAGAAGGAGCCCCGGGAGAAATTTGCATA 863 0.4299 MARRPVGRERSETRVTNRKQKKPRITEKEDEEESSISPFLTNIEVLQCFICYELLTSPVFQCKNGHSACSSCCSKVNKKCPVCSSSIGDMRNRAIEDVLESLMVPCPNAKYGCKGMVNYNKKNEHRKSCMHAPCSCPYSECRFVSSSDELSLHFRRKHESSAMSFTYEEKFKFSLVVTEKRVVLQEKDGDLFVLNNSSVVNVGNLLSVSRIAPQSSKFACNYWLFCYSDRSKRSSLKFDSITDNCQGRHLIHRPSRGSLLVPSAFSRFQYIELRIRTGKKEPREKFA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02869 287 Pfam Seven in absentia protein family 91 181 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bva12g02869 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
Bva12g02869 287 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Bva12g02869 287 SUPERFAMILY TRAF domain-like 101 262 - -
Bva12g02869 287 ProSiteProfiles Zinc finger SIAH-type profile. 101 159 IPR013010 GO:0008270
Bva12g02869 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 275 - -
Bva12g02869 287 MobiDBLite consensus disorder prediction 1 33 - -
Bva12g02869 287 SUPERFAMILY RING/U-box 38 89 - -
Bva12g02869 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 275 IPR044286 -
Bva12g02869 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02869 Bva-Chr12 20668471 20669334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02869 44 159 C3H Transcription Factor Family AT2G41980 38.983 2.00e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02869 K04506 - qsu:112007121 196.052