Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02852 atggaaGTGGCAAAGGGAGAAActgcagaaaaaaataataaagaagatgaagcGGTACTTCCTGGGTTTAGATTTCATCCCACAGATGAAGAGCTTGTTGGATTTTATCTGCGGAGAAAGGTAGAGCAGAAGCCTCTTCGGATTGAAATCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGTGGGTTCTGTGGTGGGGGACAAAGAGTGGTACTTCTTCTGCATCAGAGGGAGAAAATACAGGAACAGCATAAGACCTAACAGGGTAACAGGTTCAGGTTTCTGGAAAGCCACTGGGATTGACAAGCCCATATATGGTGTTAAAGAGCCTCACGAGTGCATTGGCCTCAAGAAATCCTTAGTCTACTACCGCGGAAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCCCCCAACCTCAATGGCAAACCCAACTCTCATGATCTCCAACCAAATGCTACCAGCAATTTTCACGAAGCTGAAGTGTGGACACTCTGCAGAATATTCAAACGAGTCTCATCATACAGAAAGTATACACCAAATTTGAAAGACACAAGCGCAGCAGCAACAGTTACCAAACCAAACGGAAGTTattcaaattctaaaacatGCAGCTTAGAATCTGAGAACAACAGCAATCCATATTACTTGAATTTCAAAGACTCATTCTCAGTTGTCCAGCAAAATGAGAGGAAACCCACTATTGCCCAAGTTTTTGATCATCATGACCAAAGAAACCACTTGTTTCTTGGTCAGTTAGGATCAATACCTCAAGTTCCTCCAACCACTGCTGTGTCGTATCCAAGTTTCTGGAATAACCCTAATGGGGAAGATGTGTTTGCTAATGGAAACTGGGATGAGCTTAGATCTGTGATTCAGTTCGCGAATATTGATCCTGATACATCCAGGGTTGATGGTTTGTA 959 0.4098 MEVAKGETAEKNNKEDEAVLPGFRFHPTDEELVGFYLRRKVEQKPLRIEIIKQIDIYKYDPWDLPMGSVVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYGVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNLNGKPNSHDLQPNATSNFHEAEVWTLCRIFKRVSSYRKYTPNLKDTSAAATVTKPNGSYSNSKTCSLESENNSNPYYLNFKDSFSVVQQNERKPTIAQVFDHHDQRNHLFLGQLGSIPQVPPTTAVSYPSFWNNPNGEDVFANGNWDELRSVIQFANIDPDTSRVDGL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02852 318 ProSiteProfiles NAC domain profile. 19 182 IPR003441 GO:0003677|GO:0006355
Bva12g02852 318 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 311 - -
Bva12g02852 318 Gene3D NAC domain 28 187 IPR036093 GO:0003677|GO:0006355
Bva12g02852 318 SUPERFAMILY NAC domain 18 181 IPR036093 GO:0003677|GO:0006355
Bva12g02852 318 PANTHER - 10 311 - -
Bva12g02852 318 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02852 Bva-Chr12 20555776 20560254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02852 10 187 NAC Transcription Factor Family AT5G39820 60.104 2.89e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva12g02852 NAM 3.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02852 - - gmx:100784323 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00895 12 9793051 9795785 Bva12g02852 12 20555776 20560254 BWGD