Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02828 ATGTCATCTAATAGTTCTTTGAATACGGAATTATCGAAGAAGACATCATTTTTGGGTTTGAAACTATGGGTTTTGATTGGCATAGGTGTTGGTGTATTTATTGTGGTTATTCTTTGTATATTATCTATATGGGTGATGTTCCGGAGGAAGTCTAGGAGATCGCTGGACAAGTACTGTCTATCCCAAATACCAAATGTCTCAAAAGATATCAAGGTTGACAAAGTTGGGGTGCAGAATTCTCATGATCACCCAGAAAATGCATTTATTCCTTCTCATGACAAGTCAAGTGACAAGAATTCAGAGAAGATGTCTGTTCATTTGGGTAGAAGCAAATCCGGTGATCCTGACAATGTCAGTCAAGGCAGCTCAGTTTATCATCATGAGAGGGCAGGTAGTTCAATGTCTGGGGAAGAAGGAAGCTCTGGGACTTTTAAGAAGCAGACTGCATTGCCACATGGAGGGCTTGTGACTGCCTCTCCTCTAGTTGGCCTGCCAGAATTTTCTCATCTTGGATGGGGCCACTGGTTTACACTTAGGGATTTGCAGCTTTCTACCAACCGTTTCTCAGCAGATAATGTGCTTGGCGAAGGTGGATATGGGGTTGTTTATAGGGGCAGACTGATCAATGGAACTGAGGTGGCAGTGAAGAAACTTCTGAACAACTTGGGGCAAGCGGAGAAGGAATTTAGGGTGGAAGTGGAGGCCATAGGTCATGTTCGACACAAAAATCTTGTTCGATTGCTTGGATATTGCATAGAAGGAGTTCACAGGCTGCTGGTGTATGAATATGTGAATAATGGTAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATCCTTGGCACAGCAAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCTAAAGTTGTTCATCGAGACATAAAATCGAGCAATATACTGATTGATAATGAGTTCAATGCCAAGGTTTCTGATTTTGGATTGGCCAAGCTTTTGGGTTCAGGAGAAAGTCACATAACCACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACTGGCCTGTTGAATGAGAGGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTAGAAGCAGTCACCGGAAGGGACCCAGTAGATTATGCCCGTCCTGCTAATGAGGTTAATCTTGTTGAATGGCTGAAGATGATGGTGGGCACAAGAAGAGCAGAAGAAGTTGTGGACCTGAGCCTTGAAGTTAAACCCCCAACACGTGCTTTAAAGCGTGCCCTTCTGGTTGCACTTAGGTGTGTTGACCCTGACGCAGACAAGCGACCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCAGATGAATATCCATTCCACGAGGATCGAAGGAATAGAAAGAGCCGCACGACAAGCATGGAAATCGAATCCATGAAGGACATTTCTGGTCCATCTGAAGCAGAAAAGAAGGTAGGGGATTCTGAAATCCATGTATCAGAAACAACACAAGGATA 1535 0.4384 MSSNSSLNTELSKKTSFLGLKLWVLIGIGVGVFIVVILCILSIWVMFRRKSRRSLDKYCLSQIPNVSKDIKVDKVGVQNSHDHPENAFIPSHDKSSDKNSEKMSVHLGRSKSGDPDNVSQGSSVYHHERAGSSMSGEEGSSGTFKKQTALPHGGLVTASPLVGLPEFSHLGWGHWFTLRDLQLSTNRFSADNVLGEGGYGVVYRGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYARPANEVNLVEWLKMMVGTRRAEEVVDLSLEVKPPTRALKRALLVALRCVDPDADKRPKMSQVVRMLEADEYPFHEDRRNRKSRTTSMEIESMKDISGPSEAEKKVGDSEIHVSETTQG 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02828 511 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Bva12g02828 511 MobiDBLite consensus disorder prediction 80 109 - -
Bva12g02828 511 SUPERFAMILY Protein kinase-like (PK-like) 172 462 IPR011009 -
Bva12g02828 511 PANTHER RECEPTOR-LIKE KINASE PLANT 2 507 - -
Bva12g02828 511 MobiDBLite consensus disorder prediction 466 481 - -
Bva12g02828 511 PANTHER OS01G0323000 PROTEIN 2 507 - -
Bva12g02828 511 MobiDBLite consensus disorder prediction 466 511 - -
Bva12g02828 511 MobiDBLite consensus disorder prediction 113 147 - -
Bva12g02828 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Bva12g02828 511 Coils Coil 208 228 - -
Bva12g02828 511 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02828 511 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02828 511 MobiDBLite consensus disorder prediction 80 148 - -
Bva12g02828 511 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Bva12g02828 511 MobiDBLite consensus disorder prediction 488 503 - -
Bva12g02828 511 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Bva12g02828 511 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02828 511 CDD STKc_IRAK 194 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02828 Bva-Chr12 20417361 20418029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02828 5 462 Trihelix Transcription Factor Family AT1G70460 39.655 4.73e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Bva12g02828 Pkinase 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02828 - - gmx:100778444 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00946 12 10079417 10083593 Bva12g02828 12 20417361 20418029 BWGD