Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02827 atggCGAAGGACAAGGACCATTATGGCTATGACCCTTTCTATTACAACCACGATGAACTCAACCAGACAAGCTTTCCATTCCTCAGGGATAACAGCCATTCAACTCCAACCCAAAACCTTCAAGGGTTTGATCCCTCTATTACAAGCTTCACTGACTGTTTACACGGCTCCATGGATTACAACACGCTCTCGAGAGCTTTCGACTTGTCTTGCTCATCCTCTGAAGTCATCTCATCCATTGATGACAACCCAAAGAAACCCAGCACAGGAGACTCAGTGGGGATCATCAGAAGGAACCCCGGCACGCCAAACTCCTCGTCGGTGTCTTCGTCATCAACTGAAGCTGAAGTAATCACGCAAGAAGACTCATCAGCTAAGAGCAAGAAAGATAAGCAGCCAAAAGGGGATGATGAAGATGCAGATGAAAAGTCTAAGAAAGAGAACAaggcaaaaaagaaagagaaaaagccaAGAGAGCCTCGCTTTGCCTTCTTGACTAAAAGTGAGGTTGATCATCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGCCCTTACCCAAGGAGCTACTACAGATGCACAAGTCAGAAGTGCATTGTGAAGAAAAGGGTGGAGAGATCATTCCAAGACCCAACAATTGTTATCACAACCTATGAAGGACAGCACAACCATCACTGTCCGGCTACACTTCGCGGCAGCGCCGCAAGCATGCTGTCCTCACATTCCCTTTTCAATTCCCCATCAATGGGGCCAAGCATACCCCAAGATCTCCTTTCCCAGTTGCTTCCAAGTTATACCCAAAATGACCACCAAGATTCCATGTTTCACCAAAACATTACCCATcatccccaacaccaccaccaacagcagcagcagcaacagtTCCCATTCAATCATGACTATGGCTTGTTGCAAGATCTATTACCCTCATTCCCTGGAAAACAAGAGCCATG 971 0.4253 MAKDKDHYGYDPFYYNHDELNQTSFPFLRDNSHSTPTQNLQGFDPSITSFTDCLHGSMDYNTLSRAFDLSCSSSEVISSIDDNPKKPSTGDSVGIIRRNPGTPNSSSVSSSSTEAEVITQEDSSAKSKKDKQPKGDDEDADEKSKKENKAKKKEKKPREPRFAFLTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSFQDPTIVITTYEGQHNHHCPATLRGSAASMLSSHSLFNSPSMGPSIPQDLLSQLLPSYTQNDHQDSMFHQNITHHPQHHHQQQQQQQFPFNHDYGLLQDLLPSFPGKQEP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02827 323 SUPERFAMILY WRKY DNA-binding domain 166 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g02827 323 MobiDBLite consensus disorder prediction 98 120 - -
Bva12g02827 323 Gene3D WRKY domain 145 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g02827 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 317 IPR044810 GO:0003700
Bva12g02827 323 Pfam WRKY DNA -binding domain 174 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02827 323 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 18 317 - -
Bva12g02827 323 SMART WRKY_cls 173 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02827 323 MobiDBLite consensus disorder prediction 121 163 - -
Bva12g02827 323 ProSiteProfiles WRKY domain profile. 168 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02827 323 MobiDBLite consensus disorder prediction 77 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02827 Bva-Chr12 20408089 20408532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02827 36 323 WRKY Transcription Factor Family AT4G18170 46.535 7.51e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva12g02827 WRKY 3.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02827 - - aprc:113847247 436.417