LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02818	ATGGAGAAACATTCTGGGAATTCTATGTCAGCCCGTGGTATTGCAGGTCCCTCTGAGATTTGCTCTTCTGATGTTGCTAAAAGAGTGGGAAGTAATGCATGGGGGATACCACGTGGGACAGATGTGTATCATGCATCAAGTGATGCTAGCTTGTTTTCTACTTCATTGCCTGTTCTTCCACATGAAAAGTTGAATTTTGCTGACTCAGAGCATAATGGTGAAGCAGCAAATGATAGCTTGTCAATATTAGATAAAGCTCAAAAAGAAGACGAGGGACATGatccatttgaaaatattgtcaCCAATGCAATCGGAAACATGCTTcctgatgatgaagaagaactTTTAGCTGGGATTGTGGATGATTTTGACCTGAGTAGGCTGCCCAGCCAACTGGAGGATCTAGATGAAAATGATCTGTTTGGAAGTGGCGGGGGGTTTGAAATGGATTTTGAACCCCAAGATAGACTTATTGTTGGTATGTCAAAGATTAGCTTATCTGATGGAGTTGCTTCAAATGGTATTGGTCATTATGCACTACCAAATGGTGTGGGCACAGTGGCTGGGGAGCATCCCTATGGGGAGCATCCGTCCAGGACTTTATTTGTTCGAAACATTAATAGTAATATTGAAGATTCTGAATTAAGATCTCTATTTGAGCAATATGGGGATATCAGAGCTTTGTACACTGCTTGCAAGCATCGAGGTTTTGTGATGATATCTTACTATGACATCCGAGCAGCTCGCACTGCAATGCGTGCTTTACAAAATAAGCCCTTGAGACGAAGAAAACTTGATATTCACTTTTCAATTCCCAAGGATAACCCATCAGAAAAGGATATTAATCAGGGAACTCTCGTAGTGTTCAATCTGGATCCATCTGTTTCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGGGAGGTCAAAGAGATCAGGGAAACGCCACATAAGAGACAccataaatttattgaattttatgatGTTAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGGATCAAACTTGAACCTAGCCGCCCTGGTGGAGCTCGTCGAAACTTGATGCAACAATTGAGTCAGGAGCTGGAGCAAGATGAAGCATGGACTTTTAGACATCAAGTGGGTTCACCATTGACCAACTCTCCGCCCGGCAATTGGGCAAAGTTCGGCAGTCCAGTTGAACATAATCCTTTGGTTTCTTTTAGCAAGTCCCCTGCTTTGGGTCTTGCCAGCCCAGTGAATGGCAACCAGTTACCCGGATTGGCTGCAATTCTTTCACCGCATGCATCAAACTCTACAAAGATTGCACCAATTGGTAAGGACCCAGGAAGAATTAGTGcttcaaattcaatatttgAGAACTCTGGATCAACACAAGGAGCAGGTTTTCAGCCGTCTCTGTCCTTTCCTGAGCCAAAAGTAAATGCAAGTCCTAGACCCATATCTAATTTTGGTGAATCTAACTTAAACTCATCAACCATTGGAACGCTATCTGGTCCTCAATTTCTTTGGGGTAGTCCAACTCCTTATTCTGAGCATGGGAGTACGTCTGCCTGGTCTTCATCTTCTATGGGATTGCCATTCACATCTAGTAGCCAGAGGCAGGGTTTCCCATATGCTAGCCAACATACTTCTTTTCTTGGTTCCCATGGCCATCATCATGTAGGATCTGCTCCTTCTGGTGTTCCTCTTGATCGAAAGTTTAGCTATTTCCCAGAGTCTCCAGAAACTTCTTTCATGAATCGAGCTGCATTTGGGAGTTTAAATCACAACGATGGAAATTTTATGATGAACATAGGTGCTTGTGCAACTGTAGGAGTTGGTGCTGGCCTTCCAGGAAATACCACTGAAATTGGTTCACCTAGTTCTAGAATGATGTCATTGCCCAGGCATGGTTCCTTGTTCCTTGGAAATGGATTTTATTCTGGACCTGGAACATCTAACAATGAAGGATTAGCTGAACGTGGTCAGAGTCGGCGACTAGAAAATAGTGGAACCCAAATTGATAGCAAGAAGCAGTATCAGCTTGATCTAGACAAAATTATCAGTGGGGAAGATACTAGGACTacattaatgattaaaaatattcctaACAAaTATACTTCAAAGATGCTCTTGGCTGCAATTGATGAGAATCACCGGGGCACTTATGACTTTCTGTACTTACCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATAATTCCCTTCTATAAGGCGTTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCATTGGCCTATGCACGAATCCAGGGAAAGGCTGCACTCGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGACAAACGTTGTAGGCCAATTCTCTTTCACTCAGAGGGCCAAGAGACTGGTGATCAGGAAGTATTCCTTTCCAGCAACTTGAACATATGCATACGGCAACCAGATGGTTCATACTCAGGTGATTTATTAGACAGCCCTAAGGGCGATTTCTATGAGaggcaagaaaaatttta	2576	0.4111	MEKHSGNSMSARGIAGPSEICSSDVAKRVGSNAWGIPRGTDVYHASSDASLFSTSLPVLPHEKLNFADSEHNGEAANDSLSILDKAQKEDEGHDPFENIVTNAIGNMLPDDEEELLAGIVDDFDLSRLPSQLEDLDENDLFGSGGGFEMDFEPQDRLIVGMSKISLSDGVASNGIGHYALPNGVGTVAGEHPYGEHPSRTLFVRNINSNIEDSELRSLFEQYGDIRALYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEAWTFRHQVGSPLTNSPPGNWAKFGSPVEHNPLVSFSKSPALGLASPVNGNQLPGLAAILSPHASNSTKIAPIGKDPGRISASNSIFENSGSTQGAGFQPSLSFPEPKVNASPRPISNFGESNLNSSTIGTLSGPQFLWGSPTPYSEHGSTSAWSSSSMGLPFTSSSQRQGFPYASQHTSFLGSHGHHHVGSAPSGVPLDRKFSYFPESPETSFMNRAAFGSLNHNDGNFMMNIGACATVGVGAGLPGNTTEIGSPSSRMMSLPRHGSLFLGNGFYSGPGTSNNEGLAERGQSRRLENSGTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETGDQEVFLSSNLNICIRQPDGSYSDALIHLQI	848

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02818	848	CDD	RRM1_MEI2_like	198	274	IPR034453	-
	Bva12g02818	848	SUPERFAMILY	RNA-binding domain, RBD	700	785	IPR035979	GO:0003676
	Bva12g02818	848	CDD	RRM3_MEI2_like	701	786	IPR034454	-
	Bva12g02818	848	MobiDBLite	consensus disorder prediction	463	485	-	-
	Bva12g02818	848	SMART	rrm1_1	200	268	IPR000504	GO:0003723
	Bva12g02818	848	SMART	rrm1_1	700	776	IPR000504	GO:0003723
	Bva12g02818	848	SMART	rrm1_1	285	353	IPR000504	GO:0003723
	Bva12g02818	848	Gene3D	-	188	282	IPR012677	-
	Bva12g02818	848	PANTHER	PROTEIN MEI2-LIKE 2	11	841	-	-
	Bva12g02818	848	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	199	272	IPR000504	GO:0003723
	Bva12g02818	848	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	201	265	IPR000504	GO:0003723
	Bva12g02818	848	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	351	IPR000504	GO:0003723
	Bva12g02818	848	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	11	841	-	-
	Bva12g02818	848	CDD	RRM2_MEI2_like	283	353	-	-
	Bva12g02818	848	Gene3D	-	283	380	IPR012677	-
	Bva12g02818	848	Pfam	RNA recognition motif 2	698	794	IPR007201	-
	Bva12g02818	848	MobiDBLite	consensus disorder prediction	656	678	-	-
	Bva12g02818	848	SUPERFAMILY	RNA-binding domain, RBD	196	359	IPR035979	GO:0003676
	Bva12g02818	848	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	357	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02818	Bva-Chr12	20352322	20358850	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g02818	194	452	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.042	7.42e-11	63.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02818	-		-	gmx:100812324	1418.68