Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02769 ATGAGCTGCTTTCTTCTATGTTGCAAGTCAAAAGAGAGGATCAATAAGAAGTCCTTGAAGAAGAACGTTAAAGAATGCCATGAAACAAAAACTATAGGCTCATTTGCCAACATTTCCCTTAAAACAGATAGCTGCAAGAGAAAGTACATAGTAGACGAGATAACAAAgtttggaaaaggaaatattaCTGCAAAGTATTTCAATTACCGCGAGCTATGCGCTGCAACTGAGAATTTCAACCCAGATAACCTGATTGGTGAAGGTGGTTTTGGGAGAGTATACAAAGGACACCTTAAGAGCCCTGATCAAGTTGTTGCTGTGAAGCAGCTTGACCGTAATGGGTACCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATGTTGAGTCTATTGACTCACCCTCACCTTGTCAAATTAGTAGGGTATTGTGCTGAAGGAGATCATAGACTTTTGGTATATGAATATATGCCCAATGGTTCATTAGAAGATCACCTTCTTGAAATAGGTGAGGGCAGAAAACCTTTGGATTGGAATACTAGGATGAAAATAGCAGGATGTGCAGCAAAAGGACTTGAATATCTGCATGACGTAGCAAATCCACCTGTTATATACCGCGATTTCAAAGCATCAAATATACTATTGGATGAGAATTTCAATGCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGACCAACTGGGGAGAAAACTCACGTATCCACCAGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCACAGACAGGGCAGTTGACAACAAAATCAGATATTTATAGCTTTGGTGTAGTGTTATTGGAGATGATCACAGGAAAAAGAGTAATTGATACTTCAAGACCtagtgaagaagaaaatttagtaGTTTGGGCACAGCCACTATTCAAAGATAAAAGCAAATTTGCATCCATGGCTGATCCATTGTTAGAAGAGAAATTCCCTGTAAAGAGTTTATACCAAGCTCTAGCAGTTGCAGCAATGTGTCTCCAAGAAGATGGTTCTTGTCGACCTCTGATGAGCGATGTTTTAACTGCTATTGAATTCTTAGCAAAGAAGAAGGTGGATGGAGAAGCAAACTGCAAtgaggatgatgatgaagaaaaggaagatagTAATGGAGATAATAATACATCAGATAGAGTAgatgacaagaaaaaatactA 1184 0.364 MSCFLLCCKSKERINKKSLKKNVKECHETKTIGSFANISLKTDSCKRKYIVDEITKFGKGNITAKYFNYRELCAATENFNPDNLIGEGGFGRVYKGHLKSPDQVVAVKQLDRNGYQGNREFLVEVLMLSLLTHPHLVKLVGYCAEGDHRLLVYEYMPNGSLEDHLLEIGEGRKPLDWNTRMKIAGCAAKGLEYLHDVANPPVIYRDFKASNILLDENFNAKLSDFGLAKLGPTGEKTHVSTRVMGTYGYCAPEYAQTGQLTTKSDIYSFGVVLLEMITGKRVIDTSRPSEEENLVVWAQPLFKDKSKFASMADPLLEEKFPVKSLYQALAVAAMCLQEDGSCRPLMSDVLTAIEFLAKKKVDGEANCNEDDDEEKEDSNGDNNTSDRVDDKKKY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02769 394 Pfam Protein kinase domain 82 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02769 394 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Bva12g02769 394 MobiDBLite consensus disorder prediction 363 394 - -
Bva12g02769 394 Gene3D Transferase(Phosphotransferase) domain 1 156 383 - -
Bva12g02769 394 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Bva12g02769 394 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Bva12g02769 394 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02769 394 PANTHER RECEPTOR SERINE/THREONINE KINASE 5 362 - -
Bva12g02769 394 PANTHER OS07G0668900 PROTEIN 5 362 - -
Bva12g02769 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Bva12g02769 394 MobiDBLite consensus disorder prediction 380 394 - -
Bva12g02769 394 CDD STKc_IRAK 85 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02769 Bva-Chr12 20100121 20102829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02769 61 372 Glycoside Hydrolase AT3G07070 69.551 3.54e-160 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bva12g02769 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02769 - - gmx:100790474 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01004 12 10384965 10387623 Bva12g02769 12 20100121 20102829 BWGD
Bva12g02769 12 20100121 20102829 Bva12g02769 12 20100121 20102829 ECH