Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02760 ATGATGCAGCAACCTGCACCCGGAATGGTCCCACCGATGATGCCGCCCATGTCGTCGATTCCATCGGATCAGCAGAACCAGCAGTTCGCGCCGGCCCCGTCACAGCAACAGTGGATGATGATGCAGACACAGCAACTTCAAGTGCCTCCACCGGCGGGTTGGTCCCCACAATCAGTGCAGATGCAGCCGCAGCTGGCGCAGCAATATGCCTCCGGGCAGAATGTTAGCTCTGGTGAGATCAGGTCGCTCTGGATTGGTGACTTGCAGCAGTGGATGGATGAAAACTACCTGATGAGCTGCTTCGCTCATACTGGCCAGATAAACTCAGCAAAGGTCATTCGTAATAAGCAAACTGGCACGCCAGAGGGTTATGGTTTCATTGAGTTTGTTACTCGTGCTGCAGCAGAGACAATCTTGCAGACATACAATGGCACATTGATGCCAAATTCTGATCAGAACTTTAGGTTGAACTGGGCCACACTTGGTCCTGGTGAGAAGCGACAAGATGACGGTCCTGATTATACCATCTTTGTTGGTGACTTGGCCGCTGATGTTACCGATTATATACTACAAGAAACTTTTAGAGCTCGTTATTCATCACTAAAGGGAGCAAAGGTGGTGACTGATCGAACTACTGGACGGTCAAAGGGCTTTGGATTTGTCAGATTTGGTGATGAAAGTGAACAAGTGCGTGCAATGAGTGAGATGAATGGTCTGTACTGTTCTACAAGACCCATGCGGGTTGGACCTGCTGCTAACAAGAAACCTGTAGCTAGCCAGCAATATCAGACAGTTACATACCAGAATACTCAAGGAAACCAGGGCGAGAATGATCCTAACAATACAACAATATTTGTTGGGAACTTGGATCCTAGTGTCTCAGATGACTTGTTGAGGCAAGTCTTCGGCCAGTTTGGTGAGCTAGTTCATGTGAAAATACCTTCAGGGAAGCGCTGTGGTTTTGTGCAGTTTGCTAATAGATCTTGTGCTGAGCAAGCATTGTCAGTGTTGAATGGAACTCCGTTACTAGGACAGAGCATTAGACTTTCATGGGGGCGTAGCCCATCAAACAAGCAGTCTCCGACCGATCAAGTCCAGTGGAATGGTGCATACTATGGCTATCCTCAAGGATATGATCCTTATACATATGCTCCTACTACACAAGATCCTAATATGTATTATGGAGGTTACCCTCCCGTTCAATATGGGAACTACCAGCAGCCACAACAGTG 1232 0.4789 MMQQPAPGMVPPMMPPMSSIPSDQQNQQFAPAPSQQQWMMMQTQQLQVPPPAGWSPQSVQMQPQLAQQYASGQNVSSGEIRSLWIGDLQQWMDENYLMSCFAHTGQINSAKVIRNKQTGTPEGYGFIEFVTRAAAETILQTYNGTLMPNSDQNFRLNWATLGPGEKRQDDGPDYTIFVGDLAADVTDYILQETFRARYSSLKGAKVVTDRTTGRSKGFGFVRFGDESEQVRAMSEMNGLYCSTRPMRVGPAANKKPVASQQYQTVTYQNTQGNQGENDPNNTTIFVGNLDPSVSDDLLRQVFGQFGELVHVKIPSGKRCGFVQFANRSCAEQALSVLNGTPLLGQSIRLSWGRSPSNKQSPTDQVQWNGAYYGYPQGYDPYTYAPTTQDPNMYYGGYPPVQYGNYQQPQQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02760 410 SUPERFAMILY RNA-binding domain, RBD 262 380 IPR035979 GO:0003676
Bva12g02760 410 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 31 409 - -
Bva12g02760 410 SUPERFAMILY RNA-binding domain, RBD 58 161 IPR035979 GO:0003676
Bva12g02760 410 CDD RRM3_NGR1_NAM8_like 281 352 - -
Bva12g02760 410 Gene3D - 80 159 IPR012677 -
Bva12g02760 410 SMART rrm1_1 82 157 IPR000504 GO:0003723
Bva12g02760 410 SMART rrm1_1 283 350 IPR000504 GO:0003723
Bva12g02760 410 SMART rrm1_1 175 249 IPR000504 GO:0003723
Bva12g02760 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 31 409 - -
Bva12g02760 410 SUPERFAMILY RNA-binding domain, RBD 159 264 IPR035979 GO:0003676
Bva12g02760 410 Gene3D - 262 363 IPR012677 -
Bva12g02760 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Bva12g02760 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Bva12g02760 410 CDD RRM1_SECp43_like 82 160 - -
Bva12g02760 410 CDD RRM2_SECp43_like 173 252 - -
Bva12g02760 410 MobiDBLite consensus disorder prediction 1 36 - -
Bva12g02760 410 Gene3D - 160 261 IPR012677 -
Bva12g02760 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 354 IPR000504 GO:0003723
Bva12g02760 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 149 IPR000504 GO:0003723
Bva12g02760 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 242 IPR000504 GO:0003723
Bva12g02760 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 347 IPR000504 GO:0003723
Bva12g02760 410 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02760 Bva-Chr12 20058472 20062423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02760 80 399 Eukaryotic Initiation Factors Gene Family AT2G23350 28.182 1.58e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02760 - - jre:108984045 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02760 12 20058472 20062423 Bva12g02760 12 20058472 20062423 ECH