Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02759 ATGAGAAGACCCAAATCAAGGGAGTTTCGCAAGCAACAGCGACTCTCAGAGGAGAATGAGATAAAGCTCTTAAATTCATGGATTCAATCCCAGAAACCAGACTCAGGCTCCAACCCCATGTCGTTTCCTCCTCTGCCGCCCAAGTCTCCTATTGGCCGCATAGACGATAATACGTTTTCGCGCTATGCGGGTGTCACGAGGTTCCACCAATTGCCACTTTCGAACAATACCAAGGATGGGTTGCGAGAAGCTAAGTTCGTTGACATGACTGATATACAGAGGGCTTCTCTGCCTCACGCGCTTTGTGGACGGGATATTCTCGGCGCGGCAAAAACTGGGTCCGGGAAGACCTTAGCTTTCATTATTCCGGTCCTGGAAAAGttatatagagagagatggGGACCCGAAGATGGGGTAGGCAGCATCATTATATCCCCTACAAGAGAATTGGCTAGTCAActatttgatgttttaaaaTCCGTTGGTAAGCACCATAACTTTAGTGCTGGTCTCCTTATTGGTGGCCGTAAGGACGttgaaacagagaaagaacGCGTAAATGAGCTGAACATATTGATCTGTACACCTGGTCGGCTTCTACAACATATGGATGAAACCCCAAATTTTGATTGTTCACAGATGCAGGTTTTAGTCCTAGATGAGGCTGATCGGATTCTTGACAGTGGATTTAAGAAGGAGCTAAATGCAATCATCTCACAGCTTCCAAAGCATAGACAGACCTTGCTTTTCTCAGCAACTCAAACAAAGTCCATTCAAGATCTTGCAAGACTAAGTTTGAAGGATCCTGAGTATCTGAGTGTTCATGAAGAGTCTGTAACTGCCACTCCCACACACTTGAAGCAAATTGTAATGGCTGTTCCCTTAGACCAGAAGTTAGATATGTTGTGGAGTTTCATAAAGTCACATCTTCAATCAAAAATACTAGTATTCCTTTCTAGTTGTAAACAgGTAAAATTCGTCTTTGAAGCATTTAAGAAACTACACCCGGGCATACCCTTGAAGTGTCTTCATGGGAGGATGAAGCAAGAGAGAAGGATGGCAATATATTCATACTTTTGTGAGAAGCGGTCAGTTCTATTTTCAACTGATGTAGCCGCAAGAGGTCTTGATTTCAATAAAGCAGTTGATTGGGTTGTTCAGgTGGATTGTCCTGAAAATGTAGCATCTTACATACACAGAGTTGGCCGAACTGCTCGTTACAAGTCTATGGGGAagtcagttttatttttgatgcCCTCGGAGATGAAAATGCTTGAAAAGTTGGAAGCAGCAAAAGTCCCAGTACGTTTTAATAAGCCGAGAAAAGAACTACTGCAACCCGTTTCAGGTTTATTGGCAGCTTTCTTGGTCAAACACCCAGACCTGCAGTATCGAGCTCAAAGGGCCTTCATCACATATTTGAGATCCATTCATATTCAGAAggacaaagagatatttgatgTTACAAAACTTCCCATTGATGAATTTTCGGCATCCTTGGGTCTGCCAATGACCCCCAAAGTTCGTTTTCTAAACCAGAAAATTAAGTCTAAAACTCTGGTGACTCAACCGACTTTAGCTGAACCAGAAGAttcaaagaaggaaaatgtaCTGGAGGCTTCAAGTGAGAAGTCAGACATAAGTGGTACTGATGATGAGGAAGCAGAAAAAGATCTTCTATTGGCAAATGATACTTTGAATGAAGAAGGGAAAGCATCTGAGATCGGAGACGTCATACCTGCAACTCGgattttgaagaagaagaagctgaagatCAATGTACATAGACCAGTAGGGAGTAGGGTTGTATTTGATGATGAAGGCAACACACTACCTCCACTGGCTCGGATCGCTGACACACAAAGTGGCCAGGATACATTCATGCTTGACCCAGAGGAAAAAGCTAAATACTATAGAAAGATGCGGGAAGAGTTAAAGAAAGCAGACAAGGAGGACAAGCTTGCACAGCGTCAGCGCcttagagagaaaagaataaaggagAAGATAAAGTGGAAGGGTGGTAATGGGGAAGAAGAGGACAATCAAGATGATATTTCTGGGTCAGAAGATGAAACTGCAAATAGACAGCGTAAAAGAAGTAAGGTGTATTTTGATTCTGACAGTGACGCCGGCGAGGGAGATGCAATCACAGGGAAACAGACTGCTGTAACTTTGGAGGAGCAAGAAGCGTTGGCTCTGAACTTGATAAATTCAATGCGCTCTTA 2225 0.4072 MRRPKSREFRKQQRLSEENEIKLLNSWIQSQKPDSGSNPMSFPPLPPKSPIGRIDDNTFSRYAGVTRFHQLPLSNNTKDGLREAKFVDMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELASQLFDVLKSVGKHHNFSAGLLIGGRKDVETEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKHRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTHLKQIVMAVPLDQKLDMLWSFIKSHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSYFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSMGKSVLFLMPSEMKMLEKLEAAKVPVRFNKPRKELLQPVSGLLAAFLVKHPDLQYRAQRAFITYLRSIHIQKDKEIFDVTKLPIDEFSASLGLPMTPKVRFLNQKIKSKTLVTQPTLAEPEDSKKENVLEASSEKSDISGTDDEEAEKDLLLANDTLNEEGKASEIGDVIPATRILKKKKLKINVHRPVGSRVVFDDEGNTLPPLARIADTQSGQDTFMLDPEEKAKYYRKMREELKKADKEDKLAQRQRLREKRIKEKIKWKGGNGEEEDNQDDISGSEDETANRQRKRSKVYFDSDSDAGEGDAITGKQTAVTLEEQEALALNLINSMRS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02759 741 SMART DUF4217_3 447 510 IPR025313 -
Bva12g02759 741 Gene3D - 54 278 IPR027417 -
Bva12g02759 741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Bva12g02759 741 MobiDBLite consensus disorder prediction 522 553 - -
Bva12g02759 741 CDD DEADc_DDX10 77 275 - -
Bva12g02759 741 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Bva12g02759 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 452 IPR001650 -
Bva12g02759 741 MobiDBLite consensus disorder prediction 528 553 - -
Bva12g02759 741 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 536 - -
Bva12g02759 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Bva12g02759 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 274 IPR027417 -
Bva12g02759 741 Coils Coil 638 658 - -
Bva12g02759 741 MobiDBLite consensus disorder prediction 688 708 - -
Bva12g02759 741 MobiDBLite consensus disorder prediction 28 50 - -
Bva12g02759 741 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Bva12g02759 741 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Bva12g02759 741 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Bva12g02759 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 424 IPR027417 -
Bva12g02759 741 CDD SF2_C_DEAD 286 417 - -
Bva12g02759 741 SMART helicmild6 325 408 IPR001650 -
Bva12g02759 741 MobiDBLite consensus disorder prediction 672 721 - -
Bva12g02759 741 Gene3D - 286 536 IPR027417 -
Bva12g02759 741 PANTHER RNA HELICASE 57 536 - -
Bva12g02759 741 SMART ultradead3 85 289 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02759 Bva-Chr12 20052881 20057978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02759 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.919 3.48e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02759 K14776 - gmx:100792106 1184.86