Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02737 ATGCTCTCCCTCACTGTAGCCGGCGGTGTTTCTTCAAGATCTTCACTTTCTAATTCATTTTGCTTCCCATTCCAATATCAGCAAGCTCAATTACTTCCCTTTGTACTCTCCTCTAAGAATCCCTCTAAAGCTGCCTCACGTGCCCCTATTCAATGTGGTCTGCGTGAACTTCGAGAACGAATCCATTCAGTGAAAAGCACGCAGAAAATCACCGAAGCCATGAAGCTTGTCGCAGTTGCTAAGGTTCGACGAGCACAAGAAGCCGTCATCAATGGAAGACCCTTTTCGGAGGCCCTTGTCGAAGTCTTGTACAATATCAATGAGCAGCTTCAAGCAGAAGACGTAGATGTTCCTTTGACCAACGTTAGACCTGTTCAGAAAGTAGCCCTTGTTGTCATCACTGGGGATCGAGGTCTCTGTGGTGGTTTCAACAATGCAGTTATTAAAAAAGCTGAGACCCGGattgaagaattgaagaaCCTTGGGTTGGATTACAGTGTAATAAGTGTTGGCAAAAAGGGTAATTCTTATTTCAATCGTAGACCTTACATTCCAGTTGATAGATTTattgaaggagaaaattttCCCACCGCGAAAGGAGCTCAAGCTATTGCAGATGATGTTTTTGCATTGTATGTTAGTGAAGAAGTTGATAAGGTTGAGCTTATATACACTAAATTCGTGTCATTAGTTAAATCTGATCCTGTGATTCATACATTGCTTCCGTTGTCACCCAAAAGAAAGGTTTATGACGTGAATGGAAATTGTGTTGATGCCATTGATGATGAGTTCTTTAGGTTGACAACTAAGGAAGGGAAGTTGACTGTGGAGAGGGGCATTATGAAGAAGAAGACATCAGAACTCTCGCCTACTATGCTATTTGAGCAAGACCCTGTTCAGATTCTTGATGCTATGATGCCACTTTATTTGAATAGTCAGATTTTGAAAGCATTGCAGGAATCACTAGCAAGTGAGCTTGCAGCAAGAATGAGTGCCATGTCTAATGCTACTGATAATGCAATTGAGCTGAAGAAGAATCTTTCAGTAGCCTACAATCGGgaaagacaaacaaaaatcaCAGGAGAGATATTGGAGATCGTGGCTGGAGCTGAGGCGCTAACACCATTCGATTGTTA 1136 0.4076 MLSLTVAGGVSSRSSLSNSFCFPFQYQQAQLLPFVLSSKNPSKAASRAPIQCGLRELRERIHSVKSTQKITEAMKLVAVAKVRRAQEAVINGRPFSEALVEVLYNINEQLQAEDVDVPLTNVRPVQKVALVVITGDRGLCGGFNNAVIKKAETRIEELKNLGLDYSVISVGKKGNSYFNRRPYIPVDRFIEGENFPTAKGAQAIADDVFALYVSEEVDKVELIYTKFVSLVKSDPVIHTLLPLSPKRKVYDVNGNCVDAIDDEFFRLTTKEGKLTVERGIMKKKTSELSPTMLFEQDPVQILDAMMPLYLNSQILKALQESLASELAARMSAMSNATDNAIELKKNLSVAYNRERQTKITGEILEIVAGAEALTPFDC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02737 378 Gene3D - 121 244 - -
Bva12g02737 378 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 53 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 CDD F1-ATPase_gamma 54 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 Hamap ATP synthase gamma chain [atpG]. 51 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 120 - -
Bva12g02737 378 Pfam ATP synthase 54 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 PRINTS ATP synthase gamma subunit signature 320 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 PRINTS ATP synthase gamma subunit signature 218 235 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 PRINTS ATP synthase gamma subunit signature 125 144 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 PRINTS ATP synthase gamma subunit signature 351 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 Gene3D ATP synthase, gamma subunit, helix hairpin domain 270 373 - -
Bva12g02737 378 ProSitePatterns ATP synthase gamma subunit signature. 359 372 IPR023632 -
Bva12g02737 378 PANTHER ATP SYNTHASE GAMMA CHAIN 8 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 53 373 IPR035968 GO:0015986|GO:0045261|GO:0046933
Bva12g02737 378 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 8 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02737 Bva-Chr12 19956152 19958449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02737 33 373 Primary Pumps ATPases AT1G15700 71.182 6.07e-176 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02737 K02115 - cpap:110808047 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02737 12 19956152 19958449 Bva12g02737 12 19956152 19958449 ECH